PDBsum entry 2qqe Go to PDB code:  Tunnel analysis for: 2qqe calculated with MOLE 2.0 PDB id 2qqe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.47 24.5 0.72 0.16 3.6 70 0 2 1 5 3 1 0  THM 501 A 2 1.41 2.02 15.9 0.02 0.37 23.6 86 2 2 0 5 0 0 0   3 1.38 2.59 17.1 0.57 0.49 20.0 86 2 2 0 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.