 |
PDBsum entry 2qnh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2qnh calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2qnh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
1 tunnel,
coloured by tunnel radius |
|
1 tunnel,
coloured by
tunnel radius
|
1 tunnel,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.26 |
186.7 |
-0.46 |
-0.38 |
12.4 |
78 |
|
11 |
6 |
1 |
16 |
3 |
3 |
0 |
|
G 7 y U 118 y A 119 y A 120 y C 121 y G 238 y U
239 y C 240 y G 251 y U 252 y C 277 y G 278 y G
281 y A 282 y C 283 y G 284 y G 299 y A 300 y G
301 y G 302 y G 319 y U 565 y G 566 y A 632 y G
633 y G 861 y C 862 y C 1426 y U 1427 y A 1428 y
C 1429 y C 1430 y C 1431 y G 1432 y G 1464 y C
1465 y C 1466 y G 1467 y A 1468 y
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program