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PDBsum entry 2qbk

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Top Page protein dna_rna ligands metals Protein-protein interface(s) links
Ribosome PDB id
2qbk
Contents
Protein chains
141 a.a.
271 a.a.
209 a.a.
121 a.a.
114 a.a.
201 a.a.
58 a.a.
56 a.a.
38 a.a.
50 a.a.
64 a.a.
94 a.a.
46 a.a.
143 a.a.
136 a.a.
63 a.a.
149 a.a.
142 a.a.
120 a.a.
116 a.a.
117 a.a.
110 a.a.
102 a.a.
178 a.a.
176 a.a.
103 a.a.
93 a.a.
77 a.a.
79 a.a.
185 a.a.
DNA/RNA
Ligands
LLL
Metals
_ZN
_MG ×111
Waters ×512
procheck   Generate full PROCHECK analyses

PROCHECK summary for 2qbk

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         1800       58.5%** 
Additional allowed regions [a,b,l,p]        964       31.3%          
Generously allowed regions [~a,~b,~l,~p]    194        6.3%          
Disallowed regions         [XX]             118        3.8%*  
                                           ----      ------
Non-glycine and non-proline residues       3076      100.0%

End-residues (excl. Gly and Pro)             55

Glycine residues                            305
Proline residues                            116
                                           ----
Total number of residues                   3552


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -1.47**
     Chi1-chi2 distribution          -1.02**
     Chi1 only                       -0.38      
     Chi3 & chi4                      0.34      
     Omega                            0.69      
                                                  -0.39      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.69      
     Main-chain bond angles           0.58      
                                                   0.63      
                                                  =====

     OVERALL AVERAGE                               0.00      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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