 |
PDBsum entry 2qb5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2qb5 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2qb5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
2.10 |
30.2 |
-0.62 |
0.00 |
14.2 |
90 |
|
3 |
2 |
2 |
6 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.21 |
2.18 |
56.9 |
-1.62 |
-0.26 |
24.2 |
84 |
8 |
5 |
2 |
8 |
2 |
0 |
0 |
SO4 544 B
|
|
3 |
 |
2.15 |
2.96 |
28.4 |
-0.52 |
0.19 |
23.4 |
87 |
8 |
3 |
4 |
6 |
2 |
0 |
0 |
SO4 546 A SO4 552 A MN 554 A ADP 557 A
|
|
4 |
 |
1.73 |
2.35 |
34.1 |
-0.72 |
0.00 |
21.1 |
86 |
7 |
3 |
4 |
6 |
2 |
1 |
0 |
SO4 546 A SO4 552 A MN 554 A ADP 557 A
|
|
5 |
 |
1.44 |
1.76 |
31.8 |
0.04 |
0.24 |
17.6 |
82 |
6 |
3 |
3 |
7 |
2 |
1 |
0 |
SO4 541 B SO4 548 B MN 555 B ADP 558 B
|
|
6 |
 |
1.43 |
1.75 |
38.1 |
-0.20 |
0.20 |
18.3 |
84 |
8 |
2 |
5 |
7 |
2 |
2 |
0 |
SO4 541 B SO4 545 B SO4 548 B SO4 549 B MN 555 B
ADP 558 B
|
 |
7 |
 |
1.42 |
3.47 |
15.4 |
1.50 |
0.23 |
1.8 |
69 |
0 |
0 |
1 |
6 |
0 |
0 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program