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PDBsum entry 2qa4
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Tunnel analysis for: 2qa4 calculated with  MOLE 2.0
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PDB id
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2qa4
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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23 tunnels,
coloured by tunnel radius |
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25 tunnels,
coloured by
tunnel radius
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25 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.25 |
1.25 |
87.9 |
-0.64 |
-0.79 |
5.7 |
94 |
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1 |
0 |
2 |
0 |
0 |
0 |
0 |
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G 622 0 G 634 0 A 635 0 C 637 0 C 638 0 A 639 0 G
640 0 C 764 0 G 765 0 U 900 0 G 901 0 C 1301 0 G
1302 0 C 1303 0 G 1319 0 U 1320 0 A 1331 0 C 1332
0 U 1333 0 A 1345 0 U 1346 0 U 1347 0 A 1355 0 A
1356 0 A 1357 0 A 1358 0 U 1359 0 C 1360 0 A 2101
0 G 2537 0
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2 |
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1.34 |
1.34 |
92.7 |
-0.66 |
-0.80 |
5.6 |
100 |
1 |
1 |
4 |
0 |
0 |
0 |
0 |
G 622 0 G 634 0 A 635 0 C 637 0 C 638 0 A 639 0 G
640 0 C 764 0 G 765 0 U 900 0 G 901 0 G 1316 0 A
1317 0 A 1318 0 G 1319 0 U 1320 0 A 1321 0 G 1323
0 A 1331 0 C 1332 0 U 1333 0 C 1334 0 C 1335 0 U
1336 0 A 1337 0 U 1338 0 G 1339 0 A 1355 0 A 1356
0 A 1357 0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G
2537 0
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3 |
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1.35 |
1.35 |
96.6 |
-0.43 |
-0.80 |
3.4 |
84 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 A 916 0 U 917 0 A
922 0 C 1044 0 G 1045 0 G 1046 0 U 1062 0 G 1063
0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 U 2282 0 G
2289 0 U 2290 0 A 2291 0 C 2292 0 A 2307 0 U 2308
0 G 2310 0 A 2311 0 G 2312 0 C 2313 0 G 2481 0 G
2482 0 A 2483 0 U 2484 0 C 2533 0 U 2535 0 G 2537
0 MG 2924 0 NA 3072 0 NA 3073 0
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4 |
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1.30 |
1.30 |
98.2 |
-0.74 |
-0.79 |
6.5 |
90 |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
A 11 0 U 12 0 G 13 0 C 14 0 C 15 0 A 16 0 G 17 0
A 520 0 A 521 0 U 522 0 C 523 0 A 524 0 G 525 0 U
526 0 G 622 0 G 634 0 A 635 0 C 637 0 C 638 0 A
639 0 G 640 0 C 764 0 G 765 0 U 900 0 G 901 0 U
1320 0 A 1321 0 G 1322 0 A 1355 0 A 1356 0 A 1357
0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G 2537 0 MG
241 Y
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5 |
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1.32 |
1.32 |
103.6 |
-0.69 |
-0.76 |
6.6 |
93 |
3 |
0 |
3 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 A 520 0 G 531
0 C 534 0 G 535 0 A 536 0 C 538 0 G 539 0 U 612 0
C 613 0 G 622 0 G 634 0 A 635 0 C 637 0 C 638 0 A
639 0 G 640 0 C 764 0 G 765 0 U 900 0 G 901 0 U
1320 0 A 1321 0 G 1322 0 A 1355 0 A 1356 0 A 1357
0 A 1358 0 U 1359 0 C 1360 0 A 2062 0 A 2101 0 G
2537 0 MG 241 Y
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6 |
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1.27 |
1.27 |
103.8 |
-0.75 |
-0.73 |
7.7 |
95 |
3 |
0 |
2 |
0 |
0 |
0 |
0 |
A 16 0 G 17 0 A 520 0 G 539 0 A 540 0 C 541 0 A
542 0 G 543 0 G 544 0 G 545 0 C 557 0 A 602 0 C
606 0 G 607 0 A 608 0 U 609 0 G 610 0 U 611 0 G
622 0 G 634 0 A 635 0 C 637 0 C 638 0 A 639 0 G
640 0 C 764 0 G 765 0 U 900 0 G 901 0 U 1320 0 A
1321 0 G 1322 0 A 1355 0 A 1356 0 A 1357 0 A 1358
0 U 1359 0 C 1360 0 A 2101 0 G 2537 0 NA 3087 0
MG 241 Y
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7 |
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1.28 |
1.28 |
104.4 |
-0.42 |
-0.79 |
3.9 |
86 |
0 |
1 |
1 |
1 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 A 913 0 A 914 0 C
915 0 A 929 0 C 930 0 G 941 0 U 942 0 A 943 0 C
1033 0 G 1034 0 C 1044 0 G 1045 0 G 1046 0 U 1062
0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A 1358 0 U
1359 0 C 1360 0 A 2101 0 C 2393 0 G 2481 0 G 2482
0 A 2483 0 U 2484 0 C 2533 0 U 2535 0 G 2537 0 MG
2924 0 NA 3073 0
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8 |
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1.36 |
1.36 |
106.2 |
-0.43 |
-0.80 |
3.4 |
84 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 C 1044 0 G 1046 0 U
1047 0 G 1048 0 C 1049 0 G 1050 0 C 1051 0 C 1060
0 C 1061 0 U 1062 0 A 1358 0 U 1359 0 C 1360 0 A
2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535
0 G 2537 0 MG 2924 0 NA 3073 0 U 79 9 A 80 9 U 82
9 A 93 9 G 94 9 C 95 9 C 96 9 U 97 9
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9 |
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1.35 |
1.35 |
109.4 |
-0.90 |
-0.74 |
7.9 |
83 |
5 |
0 |
2 |
1 |
0 |
0 |
0 |
G 622 0 G 634 0 A 635 0 G 636 0 C 637 0 C 638 0 C
764 0 G 765 0 U 845 0 U 900 0 G 901 0 A 1357 0 A
1358 0 U 1359 0 C 1360 0 C 1361 0 U 1362 0 G 1363
0 G 1364 0 C 1365 0 C 2056 0 G 2099 0 A 2100 0 A
2101 0 A 2103 0 A 2486 0 C 2487 0 G 2537 0 G 2540
0 U 2541 0 C 2542 0 UR3 2619 0 U 2620 0 A 2637 0
C 2644 0 G 2646 0 MG 2984 0 NA 3084 0 NA 3085 0
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10 |
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1.27 |
1.27 |
110.5 |
-1.43 |
-0.73 |
13.5 |
85 |
7 |
1 |
5 |
3 |
0 |
0 |
0 |
A 466 0 G 467 0 A 476 0 A 497 0 G 514 0 G 622 0 G
634 0 A 635 0 G 636 0 C 637 0 C 638 0 C 764 0 G
765 0 U 900 0 G 901 0 A 1357 0 A 1358 0 U 1359 0
C 1360 0 C 1361 0 U 1362 0 G 1363 0 G 1364 0 C
1365 0 A 1427 0 C 1428 0 G 1441 0 A 1442 0 C 2056
0 A 2101 0 G 2537 0 MG 2984 0 NA 3084 0 NA 3085 0
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11 |
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1.27 |
1.27 |
110.9 |
-0.55 |
-0.78 |
4.5 |
92 |
1 |
1 |
2 |
2 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 G 956 0 C 1044 0 G
1046 0 U 1047 0 G 1048 0 C 1049 0 G 1050 0 C 1051
0 G 1052 0 G 1055 0 C 1060 0 C 1061 0 U 1062 0 A
1222 0 G 1223 0 A 1358 0 U 1359 0 C 1360 0 A 2101
0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U 2535 0 G
2537 0 MG 2924 0 NA 3073 0 A 80 9 C 81 9 A 93 9 G
94 9 C 95 9 C 96 9 NA 125 9
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12 |
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1.32 |
1.32 |
111.2 |
-0.79 |
-0.78 |
6.7 |
94 |
3 |
0 |
5 |
0 |
0 |
0 |
0 |
A 542 0 G 543 0 C 556 0 C 557 0 C 594 0 G 607 0 A
608 0 U 609 0 G 622 0 G 634 0 A 635 0 C 637 0 C
638 0 A 639 0 G 640 0 C 764 0 G 765 0 U 900 0 G
901 0 A 1092 0 G 1093 0 U 1320 0 A 1321 0 G 1323
0 G 1324 0 G 1325 0 U 1326 0 G 1327 0 A 1331 0 C
1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 A 1358
0 U 1359 0 C 1360 0 A 2101 0 G 2537 0
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13 |
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1.19 |
1.19 |
113.2 |
-0.64 |
-0.78 |
6.7 |
83 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 U 845 0 U
883 0 C 884 0 U 888 0 A 895 0 C 896 0 A 897 0 A
1358 0 U 1359 0 C 1360 0 G 1837 0 A 2100 0 A 2101
0 A 2103 0 C 2104 0 C 2105 0 C 2106 0 G 2285 0 G
2286 0 C 2287 0 C 2472 0 U 2473 0 A 2474 0 C 2476
0 C 2477 0 U 2478 0 A 2479 0 G 2480 0 A 2538 0 U
2620 0 PSU 2621 0 C 2629 0 G 2630 0 G 2632 0 A
2635 0 C 2636 0 A 2637 0 C 2644 0
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14 |
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1.29 |
1.29 |
126.5 |
-0.81 |
-0.78 |
8.6 |
87 |
2 |
3 |
2 |
0 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 G 911 0 A 912 0 A
913 0 A 914 0 C 915 0 C 1044 0 G 1045 0 G 1046 0
U 1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A
1067 0 C 1068 0 G 1072 0 G 1087 0 A 1088 0 G 1089
0 C 1262 0 C 1263 0 U 1264 0 G 1265 0 U 1266 0 C
1267 0 U 1285 0 A 1286 0 A 1287 0 G 1290 0 A 1291
0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G
2482 0 A 2483 0 U 2484 0 C 2533 0 U 2535 0 G 2537
0 MG 2924 0 NA 3073 0 CL 3112 0
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15 |
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1.31 |
1.31 |
134.8 |
-0.42 |
-0.80 |
3.4 |
84 |
0 |
0 |
1 |
0 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 C 1044 0 G 1046 0 U
1047 0 G 1048 0 G 1059 0 C 1060 0 G 1077 0 A 1078
0 C 1080 0 A 1082 0 C 1083 0 G 1100 0 U 1101 0 G
1110 0 U 1111 0 G 1112 0 G 1113 0 A 1114 0 U 1122
0 A 1123 0 A 1124 0 U 1125 0 C 1126 0 C 1127 0 U
1128 0 G 1239 0 C 1245 0 A 1246 0 A 1248 0 U 1249
0 C 1250 0 C 1251 0 A 1252 0 C 1253 0 A 1358 0 U
1359 0 C 1360 0 G 2072 0 A 2101 0 G 2481 0 G 2482
0 A 2483 0 C 2533 0 U 2535 0 G 2537 0 MG 2924 0 N
A 3073 0
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16 |
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1.21 |
1.21 |
137.3 |
-0.93 |
-0.75 |
10.4 |
81 |
6 |
1 |
1 |
0 |
0 |
0 |
0 |
G 118 0 A 119 0 A 120 0 U 123 0 C 124 0 C 764 0 G
765 0 A 766 0 U 768 0 C 769 0 C 770 0 G 771 0 G
772 0 A 773 0 C 774 0 U 864 0 G 865 0 U 866 0 A
867 0 G 868 0 G 869 0 G 887 0 U 888 0 C 889 0 C
890 0 A 895 0 C 896 0 A 897 0 A 1358 0 U 1359 0 C
1360 0 G 1453 0 U 1454 0 C 1455 0 C 1456 0 U 1457
0 G 1460 0 U 1461 0 C 1462 0 C 1474 0 G 1475 0 A
1482 0 C 1483 0 G 1484 0 A 1485 0 A 1486 0 A 1659
0 A 2101 0 A 2479 0 G 2480 0 NA 3096 0
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17 |
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1.31 |
1.31 |
138.2 |
-0.53 |
-0.80 |
4.9 |
81 |
1 |
1 |
1 |
0 |
0 |
0 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 U 900 0 G 901 0 C 1044 0 G 1046 0 U
1047 0 G 1048 0 C 1049 0 A 1058 0 G 1059 0 C 1060
0 C 1061 0 U 1062 0 G 1119 0 U 1120 0 C 1127 0 U
1128 0 C 1129 0 U 1130 0 C 1228 0 A 1231 0 A 1232
0 A 1236 0 U 1237 0 C 1238 0 A 1358 0 U 1359 0 C
1360 0 G 2068 0 A 2101 0 G 2481 0 G 2482 0 A 2483
0 U 2492 0 C 2493 0 G 2524 0 G 2525 0 C 2533 0 U
2535 0 G 2537 0 A 2776 0 G 2777 0 A 2792 0 MG
2924 0 NA 3073 0 C 91 9 G 92 9 A 93 9
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18 |
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1.26 |
1.26 |
152.8 |
-0.53 |
-0.79 |
4.7 |
86 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 G 622 0 A 631 0 C 633 0 G 634 0 A
635 0 G 636 0 C 637 0 C 638 0 C 764 0 G 765 0 U
900 0 G 901 0 A 1357 0 A 1358 0 U 1359 0 C 1360 0
C 1361 0 U 1362 0 G 1363 0 G 1364 0 A 1367 0 C
2056 0 U 2057 0 G 2058 0 U 2059 0 A 2060 0 A 2062
0 U 2063 0 G 2075 0 A 2083 0 C 2084 0 A 2085 0 C
2086 0 C 2087 0 A 2095 0 A 2096 0 C 2098 0 G 2099
0 A 2100 0 A 2101 0 G 2537 0 U 2650 0 C 2651 0 U
2652 0 A 2653 0 C 2654 0 U 2655 0 G 2658 0 U 2659
0 A 2664 0 G 2667 0 G 2668 0 U 2669 0 C 2672 0 G
2810 0 A 2811 0 A 2812 0 G 2817 0 A 2818 0 C 2819
0 C 2844 0 MG 2984 0 NA 3084 0 NA 3085 0
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19 |
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1.32 |
1.32 |
155.1 |
-0.71 |
-0.75 |
6.2 |
83 |
5 |
0 |
2 |
1 |
0 |
0 |
0 |
G 622 0 G 634 0 A 635 0 G 636 0 C 637 0 C 638 0 C
764 0 G 765 0 G 833 0 G 834 0 U 835 0 G 836 0 C
839 0 U 845 0 A 846 0 U 900 0 G 901 0 A 1357 0 A
1358 0 U 1359 0 C 1360 0 C 1361 0 U 1362 0 G 1363
0 G 1364 0 C 1365 0 G 1751 0 C 1753 0 C 1768 0 C
1769 0 A 1821 0 A 1822 0 G 1823 0 C 1824 0 U 1825
0 U 1838 0 A 2018 0 A 2019 0 C 2020 0 C 2021 0 A
2022 0 G 2023 0 A 2024 0 C 2026 0 C 2056 0 G 2099
0 A 2100 0 A 2101 0 G 2537 0 G 2617 0 G 2643 0 C
2644 0 U 2645 0 G 2646 0 MG 2984 0 NA 3084 0 NA
3085 0
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20 |
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1.33 |
1.33 |
158.9 |
-0.72 |
-0.76 |
6.3 |
83 |
5 |
0 |
2 |
1 |
0 |
0 |
0 |
G 622 0 G 634 0 A 635 0 G 636 0 C 637 0 C 638 0 C
764 0 G 765 0 U 825 0 G 828 0 G 830 0 U 831 0 C
839 0 U 845 0 A 846 0 C 847 0 C 848 0 C 849 0 U
850 0 U 900 0 G 901 0 A 1357 0 A 1358 0 U 1359 0
C 1360 0 C 1361 0 U 1362 0 G 1363 0 G 1364 0 C
1365 0 G 1378 0 A 1379 0 A 1407 0 A 1712 0 G 1713
0 G 1756 0 U 1757 0 U 1758 0 A 1759 0 A 1815 0 C
1816 0 U 1817 0 C 1818 0 G 1837 0 U 1838 0 C 2056
0 G 2099 0 A 2100 0 A 2101 0 G 2537 0 C 2644 0 U
2645 0 G 2646 0 C 2751 0 C 2752 0 G 2753 0 MG
2984 0 MG 2989 0 NA 3084 0 NA 3085 0 NA 3100 0
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21 |
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1.26 |
1.26 |
169.8 |
-0.70 |
-0.75 |
6.1 |
83 |
5 |
0 |
2 |
1 |
0 |
0 |
0 |
G 622 0 G 634 0 A 635 0 G 636 0 C 637 0 C 638 0 C
764 0 G 765 0 A 788 0 C 789 0 U 825 0 A 827 0 G
828 0 A 829 0 G 830 0 U 831 0 C 839 0 U 845 0 A
846 0 C 847 0 C 848 0 C 849 0 U 850 0 U 900 0 G
901 0 A 1357 0 A 1358 0 U 1359 0 C 1360 0 C 1361
0 U 1362 0 G 1363 0 G 1364 0 C 1365 0 A 1406 0 A
1407 0 G 1535 0 C 1536 0 C 1537 0 U 1539 0 A 1642
0 C 1643 0 U 1645 0 G 1646 0 G 1647 0 G 1648 0 G
1649 0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699
0 C 1700 0 A 1701 0 G 1837 0 U 1838 0 C 2056 0 G
2099 0 A 2100 0 A 2101 0 G 2537 0 C 2644 0 U 2645
0 G 2646 0 MG 2984 0 NA 3084 0 NA 3085 0 NA 3100 0
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22 |
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1.55 |
1.55 |
15.4 |
-2.18 |
-0.56 |
25.8 |
91 |
4 |
0 |
1 |
1 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0
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23 |
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1.33 |
1.33 |
17.2 |
-0.86 |
-0.21 |
19.0 |
93 |
1 |
1 |
1 |
3 |
0 |
0 |
0 |
U 325 0 G 326 0 A 327 0 C 330 0
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24 |
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1.33 |
1.33 |
20.9 |
-1.57 |
-0.47 |
30.4 |
90 |
1 |
3 |
0 |
2 |
0 |
0 |
0 |
G 324 0 U 325 0 A 327 0 C 330 0
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25 |
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1.32 |
1.41 |
15.0 |
2.27 |
0.49 |
1.4 |
92 |
0 |
0 |
1 |
5 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program