PDBsum entry 2q9c Go to PDB code:  Tunnel analysis for: 2q9c calculated with MOLE 2.0 PDB id 2q9c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 3.16 23.4 -0.20 -0.11 12.0 80 3 2 2 4 1 0 0  GNP 950 A 2 1.52 2.15 26.8 -0.49 -0.14 6.8 83 3 0 3 5 1 0 0  SO4 908 A 3 1.57 1.64 29.5 0.40 0.01 6.4 81 4 1 3 7 1 1 0  SO4 905 A SO4 907 B 4 1.56 1.65 38.2 -0.28 -0.21 12.7 82 4 2 4 8 1 1 0  SO4 904 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.