PDBsum entry 2q4d Go to PDB code:  Tunnel analysis for: 2q4d calculated with MOLE 2.0 PDB id 2q4d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.42 36.3 0.66 0.17 11.5 75 5 4 0 7 3 0 1  MSE 102 A MSE 125 A 2 1.32 1.91 40.0 0.05 0.07 13.1 74 3 4 1 6 4 1 0  MSE 95 A MSE 102 A MSE 125 A 3 1.36 1.81 39.9 0.34 0.13 13.1 75 3 3 0 9 3 1 0  MSE 95 A MSE 102 A MSE 125 A 4 1.39 2.33 43.9 -0.14 -0.02 16.7 77 5 4 1 6 3 0 0  MSE 102 A MSE 125 A 5 1.23 3.41 15.0 0.42 0.33 16.4 78 2 1 0 7 1 0 0  MSE 181 B 6 1.27 1.66 26.7 1.23 0.23 3.4 83 1 0 0 7 1 0 0  MSE 181 B MSE 184 B 7 1.27 1.66 27.2 1.04 0.27 4.9 80 2 0 1 8 2 0 0  MSE 181 B MSE 184 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.