PDBsum entry 2q1j Go to PDB code:  Tunnel analysis for: 2q1j calculated with MOLE 2.0 PDB id 2q1j Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.24 23.7 -0.96 -0.73 11.9 72 1 1 2 1 2 0 1  FXI 801 A 2 1.16 1.21 26.5 -0.54 -0.55 10.5 70 1 1 2 3 3 0 1  FXI 801 A 3 1.36 1.36 15.9 -1.24 -0.55 15.8 80 1 2 1 1 1 0 0   4 1.12 3.88 15.7 1.85 0.43 1.3 64 0 0 0 5 2 0 1   5 1.48 1.49 18.8 -2.90 -0.55 32.0 85 3 2 2 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.