PDBsum entry 2pyj Go to PDB code:  Pore analysis for: 2pyj calculated with MOLE 2.0 PDB id 2pyj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   22 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.76 1.76 35.7 -0.91 -0.37 15.8 93 3 2 3 4 0 0 0  EDO 2804 A DA 2 X DC 3 X DA 3 Y DC 4 Y DA 5 Y DG 7 Y 2 1.37 1.37 42.8 -1.30 -0.45 12.4 71 4 2 3 2 1 3 0  EDO 2795 B DG 5 Q DC 6 Q DT 7 Q DT 8 Q DC 16 R 3 1.88 1.88 46.3 -0.79 -0.47 9.6 90 5 1 5 3 0 0 0  DG 1 J DA 2 J DC 5 K DA 6 K DA 11 K DG 12 K DG 1 Q DA 2 Q DC 3 Q DT 4 Q DC 6 Q DC 4 R DA 5 R DG 7 R DT 8 R DA 9 R DA 10 R DG 11 R DC 12 R EDO 2796 R 4 1.27 1.76 48.1 -1.20 -0.53 13.3 80 7 0 2 2 0 0 0  DG 1 Q DA 2 Q DC 3 Q DT 4 Q DG 5 Q DC 6 Q DT 8 R DA 9 R DA 10 R DG 11 R DC 12 R DC 16 R EDO 2796 R 5 1.29 1.77 50.9 -0.40 -0.36 10.5 88 3 1 4 4 0 0 0  DG 1 J DA 2 J DC 5 K DA 6 K DA 11 K DG 12 K DT 4 Q DG 5 Q DC 4 R DA 5 R DG 7 R DC 16 R 6 1.34 1.47 52.9 -1.35 -0.44 15.5 82 5 2 4 3 1 1 0  EDO 2786 A EDO 2804 A DT 8 X DA 9 X DOC 10 X DA 3 Y DC 4 Y DA 5 Y DC 6 Y DG 7 Y 7 1.96 2.04 52.7 -1.09 -0.34 10.7 74 6 2 3 3 1 3 0  EDO 2795 B DG 1 Q DA 2 Q DC 3 Q DT 4 Q DC 6 Q DT 8 Q EDO 2785 Q DC 6 R DG 7 R DT 8 R DA 9 R DA 10 R DG 11 R DC 12 R EDO 2796 R 8 1.35 1.48 55.1 -1.58 -0.47 16.7 82 5 2 4 3 1 1 0  DGT 1588 A EDO 2786 A EDO 2804 A DT 8 X DA 9 X D OC 10 X DA 3 Y DC 4 Y DA 5 Y DC 6 Y DG 7 Y 9 1.89 1.89 72.3 -0.71 -0.34 9.6 80 2 4 5 5 1 3 0  EDO 2795 B DA 2 J DC 5 K DA 6 K DA 11 K DG 12 K EDO 2766 K DT 8 Q EDO 2785 Q DC 4 R DA 5 R DC 6 R DG 7 R DT 8 R 10 2.09 2.09 77.1 -0.93 -0.35 18.8 77 6 8 0 4 3 2 0  DA 2 J DA 6 K DC 7 K DG 8 K DT 9 K DA 10 K DA 11 K DG 12 K EDO 2765 K DC 4 R DG 14 Y DT 15 Y EDO 2788 Y 11 2.43 2.73 82.6 -1.00 -0.45 15.7 77 8 6 1 5 3 1 0  DG 1 J DA 2 J DT 4 J DC 6 J DA 6 K DC 7 K DG 8 K DT 9 K DA 10 K DA 11 K DG 12 K EDO 2765 K DC 4 R DA 2 X DC 3 X DT 4 X DG 5 X EDO 2782 X EDO 2798 X DG 14 Y DT 15 Y DC 16 Y EDO 2788 Y 12 3.53 3.56 83.9 -0.82 -0.27 18.5 78 9 7 1 5 2 1 0  DT 4 J DC 6 J DA 2 X DC 3 X DT 4 X DG 5 X EDO 2782 X EDO 2798 X DT 15 Y DC 16 Y EDO 2788 Y 13 2.92 3.59 95.9 -2.10 -0.51 25.2 76 17 7 4 4 2 2 0  EDO 2763 B EDO 2776 B EDO 2795 B EDO 2802 B DT 8 Q DA 9 Q DA 2 X DC 3 X DT 4 X DG 11 Y DC 12 Y EDO 2772 Y 14 1.08 1.42 154.4 -1.46 -0.40 17.4 76 16 5 8 10 2 3 0  EDO 2763 B EDO 2776 B EDO 2802 B DG 5 Q DC 6 Q DT 7 Q DT 8 Q DA 9 Q DOC 10 Q EDO 2785 Q DC 16 R DA 2 X DT 7 X DT 8 X DC 6 Y DG 7 Y DT 8 Y DA 9 Y DA 10 Y DG 11 Y DC 12 Y EDO 2772 Y Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.