PDBsum entry 2pyj Go to PDB code:  Tunnel analysis for: 2pyj calculated with MOLE 2.0 PDB id 2pyj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.51 50.8 -0.56 0.11 14.0 80 6 1 4 8 2 0 0  DA 2 X DC 3 X DT 4 X DG 11 Y DC 12 Y EDO 2772 Y 2 1.29 1.51 57.2 -1.30 -0.14 24.1 80 8 3 4 7 1 0 0  DG 11 Y 3 1.27 1.50 71.0 -0.65 -0.24 12.5 76 5 4 2 8 3 0 0  DA 6 K DC 7 K DG 8 K DT 9 K DA 10 K DA 11 K EDO 2765 K DC 4 R DG 14 Y DT 15 Y EDO 2788 Y Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.