PDBsum entry 2prt Go to PDB code:  Tunnel analysis for: 2prt calculated with MOLE 2.0 PDB id 2prt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.31 15.2 -0.52 -0.11 15.0 84 3 0 1 0 1 0 0  DG 4 B DG 5 B DG 6 B 2 1.27 1.28 16.5 -0.73 -0.26 15.2 84 4 0 1 0 1 0 0  DG 4 B DG 5 B 3 1.41 1.54 24.7 -1.41 -0.35 19.9 80 4 1 0 0 2 0 0  DG 4 B DG 5 B DC 55 C DC 56 C DC 57 C 4 1.16 1.53 36.2 -1.38 -0.44 19.1 81 5 1 0 1 2 0 0  DC 3 B DG 4 B DG 5 B DC 56 C DC 57 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.