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PDBsum entry 2pr9
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Endocytosis PDB id
2pr9
Contents
Protein chain
254 a.a.
Ligands
ASP-GLU-GLU-TYR-
GLY-TYR-GLU-CYS-
LEU-ASP
Waters ×59
procheck   Generate full PROCHECK analyses

PROCHECK summary for 2pr9

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          201       88.9%*  
Additional allowed regions [a,b,l,p]         21        9.3%          
Generously allowed regions [~a,~b,~l,~p]      2        0.9%          
Disallowed regions         [XX]               2        0.9%*  
                                           ----      ------
Non-glycine and non-proline residues        226      100.0%

End-residues (excl. Gly and Pro)              8

Glycine residues                             15
Proline residues                             15
                                           ----
Total number of residues                    264

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.54*     
     Chi1-chi2 distribution          -0.51*     
     Chi1 only                        0.05      
     Chi3 & chi4                      0.26      
     Omega                           -0.95*     
                                                  -0.51*     
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -0.65*     
     Main-chain bond angles          -0.47      
                                                  -0.55*     
                                                  =====

     OVERALL AVERAGE                              -0.54*     
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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