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PDBsum entry 2pn5
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Pore analysis for: 2pn5 calculated with  MOLE 2.0
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PDB id
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2pn5
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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11 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.05 |
2.18 |
25.7 |
-1.28 |
-0.04 |
9.3 |
78 |
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3 |
0 |
5 |
3 |
2 |
2 |
0 |
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2 |
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1.43 |
1.47 |
33.4 |
-1.19 |
-0.62 |
16.8 |
79 |
3 |
5 |
2 |
4 |
0 |
0 |
0 |
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3 |
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1.35 |
1.48 |
38.0 |
-1.01 |
-0.34 |
16.9 |
80 |
3 |
3 |
3 |
1 |
2 |
0 |
0 |
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4 |
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2.66 |
2.65 |
54.8 |
-1.57 |
-0.23 |
19.1 |
76 |
5 |
3 |
3 |
4 |
5 |
1 |
0 |
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5 |
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2.46 |
4.43 |
60.7 |
-2.04 |
-0.41 |
21.3 |
87 |
4 |
3 |
4 |
3 |
2 |
1 |
0 |
NA 1332 A
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6 |
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2.81 |
5.40 |
65.2 |
-1.28 |
-0.30 |
16.0 |
82 |
6 |
4 |
6 |
4 |
5 |
1 |
0 |
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7 |
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1.34 |
1.26 |
130.1 |
-0.83 |
-0.21 |
17.6 |
85 |
8 |
4 |
7 |
8 |
2 |
0 |
0 |
NAG 1326 A
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8 |
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1.34 |
1.28 |
134.2 |
-0.69 |
-0.17 |
17.3 |
82 |
9 |
4 |
6 |
8 |
4 |
0 |
0 |
NAG 1326 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program