PDBsum entry 2pk5 Go to PDB code:  Tunnel analysis for: 2pk5 calculated with MOLE 2.0 PDB id 2pk5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.00 2.77 19.6 1.20 0.25 8.1 83 1 2 0 6 1 1 0  075 900 A 2 2.16 2.59 21.9 0.31 -0.08 13.6 93 2 3 0 5 0 0 0  075 900 A 3 2.19 2.60 22.0 0.45 -0.03 11.1 84 1 3 0 5 1 1 0  075 900 A 4 1.52 1.52 23.3 1.33 0.29 8.7 83 1 3 0 8 1 1 0  075 900 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.