PDBsum entry 2pd8 Go to PDB code:  Tunnel analysis for: 2pd8 calculated with MOLE 2.0 PDB id 2pd8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 0.99 3.76 24.0 -0.76 -0.02 12.0 82 3 2 5 5 2 0 1  FAD 7202 B 2 0.98 3.71 37.2 -0.58 0.15 10.2 82 4 1 8 7 3 0 1  FAD 7202 B 3 1.49 1.56 20.4 -1.40 -0.19 24.2 75 4 1 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.