PDBsum entry 2pca

Tunnel analysis for: 2pca calculated with

MOLE 2.0

PDB id

2pca

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.12

1.85

22.7

-0.25

-0.29

8.1

87

2

0

0

2

2

1

0

2

1.12

1.84

38.2

-0.35

-0.18

7.3

82

2

1

1

4

3

3

0

3

1.21

1.39

24.7

0.16

-0.03

4.8

84

2

1

1

5

2

1

0

SAH 501 A

4

1.12

1.18

27.6

-0.35

-0.15

4.5

81

2

0

1

5

1

2

0

SAH 501 A

5

1.22

1.22

21.1

-1.05

-0.26

15.7

79

2

1

1

2

0

2

0

6

1.28

1.28

20.6

-0.94

-0.26

15.8

79

2

1

1

2

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.