PDBsum entry 2p5b Go to PDB code:  Tunnel analysis for: 2p5b calculated with MOLE 2.0 PDB id 2p5b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.27 20.6 -0.87 -0.01 15.0 79 4 0 2 2 2 0 1   2 1.25 1.25 21.4 -0.84 -0.11 13.9 83 4 0 2 2 2 0 1   3 1.27 1.27 22.9 -0.29 0.03 9.9 78 2 1 2 3 3 0 1   4 1.27 1.27 23.3 -0.85 -0.23 10.1 78 2 0 3 3 3 1 0   5 1.26 1.26 23.7 -0.43 -0.13 9.8 82 2 1 2 3 3 0 1   6 1.27 1.27 24.1 -0.84 -0.29 9.5 81 2 0 3 3 3 1 0   7 1.16 1.42 29.5 -0.21 -0.38 4.0 78 2 0 3 2 3 2 0   8 1.27 1.47 19.8 -1.78 -0.39 17.3 73 3 1 0 1 1 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.