spacer
spacer

PDBsum entry 2p1c

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2p1c calculated with MOLE 2.0 PDB id
2p1c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.03 2.24 29.9 -2.08 -0.38 22.9 76 8 3 4 3 3 0 0  ACT 8002 B GG3 8004 B
2 1.27 1.45 39.7 -1.84 -0.24 21.1 78 9 3 5 3 3 0 0  GG3 3001 A ACT 8001 A ACT 8003 A
3 1.24 1.44 42.8 -1.61 -0.43 20.5 82 6 6 5 4 2 1 0  GG3 3001 A MG 3002 A MG 3003 A
4 1.21 1.43 42.8 -1.72 -0.11 19.9 79 8 3 6 3 3 0 0  GG3 3001 A ACT 8001 A ACT 8003 A
5 1.47 3.61 17.3 0.60 0.12 3.0 72 1 0 1 3 2 0 1  
6 1.36 1.54 24.1 0.18 0.01 6.6 69 2 1 1 4 2 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer