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PDBsum entry 2ozb

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2ozb calculated with MOLE 2.0 PDB id
2ozb
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.32 29.3 -0.34 -0.31 11.0 85 4 1 1 6 0 0 0  A 29 C A 30 C U 31 C G 32 C A 33 C
2 1.22 1.32 42.9 -0.59 -0.16 11.5 81 6 0 1 6 1 0 0  C 28 C U 31 C G 32 C A 33 C G 34 C
3 1.23 1.32 46.3 -0.37 -0.15 9.5 80 4 1 1 7 1 0 0  C 28 C U 31 C G 32 C A 33 C G 34 C G 35 C G 46 C
C 47 C
4 1.53 2.46 15.3 -2.99 -0.58 26.3 84 2 0 2 0 0 1 0  U 38 F C 41 F C 42 F
5 1.49 1.54 16.2 -2.16 -0.61 28.1 69 3 1 0 0 0 0 1  G 43 F A 44 F G 45 F
6 1.46 2.17 16.0 1.40 0.39 7.2 89 1 1 2 9 0 0 0  
7 1.21 1.86 18.7 1.81 0.67 8.4 89 1 2 2 6 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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