spacer
spacer

PDBsum entry 2oye

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 2oye calculated with MOLE 2.0 PDB id
2oye
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.71 1.88 42.8 0.83 0.29 6.0 83 2 0 4 9 3 1 0  IM8 700 P BOG 751 P
2 1.39 1.39 45.5 1.33 0.41 3.9 74 1 0 2 11 6 2 0  IM8 700 P BOG 751 P
3 1.70 1.89 46.5 0.28 0.16 9.9 85 4 1 5 9 3 0 0  IM8 700 P BOG 751 P
4 1.39 1.39 49.1 0.76 0.28 7.4 77 3 1 3 11 6 1 0  IM8 700 P BOG 751 P
5 1.38 1.38 49.2 0.72 0.15 3.1 79 1 0 5 7 7 1 0  IM8 700 P
6 1.30 1.30 68.5 -1.44 -0.18 14.6 81 3 2 5 2 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer