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PDBsum entry 2ox9
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Tunnel analysis for: 2ox9 calculated with  MOLE 2.0
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PDB id
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2ox9
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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22 tunnels,
coloured by
tunnel radius
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22 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
2.61 |
16.9 |
-1.08 |
-0.42 |
18.8 |
80 |
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1 |
4 |
1 |
0 |
2 |
0 |
0 |
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2 |
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1.57 |
1.57 |
20.3 |
-0.35 |
-0.23 |
8.2 |
83 |
2 |
3 |
3 |
4 |
2 |
1 |
0 |
NAG 1 F FUC 2 F GAL 3 F
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3 |
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2.08 |
4.22 |
22.5 |
-2.56 |
-0.70 |
23.3 |
82 |
2 |
7 |
4 |
1 |
1 |
1 |
0 |
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4 |
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1.58 |
2.20 |
23.5 |
-1.08 |
-0.49 |
19.1 |
83 |
4 |
2 |
1 |
2 |
0 |
0 |
0 |
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5 |
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2.12 |
4.24 |
24.6 |
-2.45 |
-0.69 |
22.7 |
82 |
2 |
6 |
4 |
1 |
1 |
1 |
0 |
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6 |
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2.39 |
3.97 |
28.7 |
-1.92 |
-0.26 |
23.1 |
81 |
3 |
7 |
4 |
3 |
3 |
1 |
0 |
NAG 1 F FUC 2 F GAL 3 F
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7 |
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1.95 |
1.95 |
29.0 |
-2.45 |
-0.49 |
25.1 |
80 |
3 |
6 |
4 |
0 |
2 |
0 |
0 |
FUC 2 F
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8 |
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1.28 |
1.62 |
29.1 |
-2.14 |
-0.57 |
24.0 |
85 |
2 |
7 |
3 |
2 |
1 |
1 |
0 |
NAG 1 F
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9 |
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1.61 |
1.77 |
30.2 |
-1.57 |
-0.61 |
21.8 |
80 |
3 |
3 |
1 |
2 |
0 |
1 |
0 |
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10 |
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2.33 |
4.26 |
31.1 |
-1.84 |
-0.23 |
22.9 |
82 |
3 |
6 |
4 |
3 |
3 |
1 |
0 |
NAG 1 F FUC 2 F GAL 3 F
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11 |
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1.94 |
1.94 |
31.1 |
-2.43 |
-0.48 |
24.5 |
81 |
3 |
5 |
4 |
0 |
2 |
0 |
0 |
FUC 2 F
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12 |
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1.54 |
1.65 |
31.3 |
-1.27 |
-0.70 |
17.5 |
89 |
3 |
4 |
3 |
3 |
0 |
0 |
0 |
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13 |
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1.33 |
1.62 |
31.5 |
-2.25 |
-0.57 |
25.2 |
86 |
2 |
6 |
3 |
2 |
1 |
1 |
0 |
NAG 1 F
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14 |
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2.08 |
4.23 |
32.0 |
-2.59 |
-0.78 |
27.4 |
82 |
4 |
7 |
5 |
1 |
1 |
1 |
0 |
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15 |
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2.12 |
4.24 |
34.1 |
-2.52 |
-0.76 |
26.9 |
82 |
4 |
6 |
5 |
1 |
1 |
1 |
0 |
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16 |
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2.06 |
4.23 |
46.2 |
-2.38 |
-0.53 |
21.3 |
80 |
6 |
7 |
6 |
2 |
2 |
1 |
0 |
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17 |
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2.13 |
4.24 |
48.3 |
-2.32 |
-0.55 |
21.0 |
80 |
6 |
6 |
6 |
2 |
2 |
1 |
0 |
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18 |
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1.52 |
1.87 |
50.3 |
-2.61 |
-0.53 |
22.2 |
82 |
5 |
8 |
7 |
1 |
2 |
2 |
0 |
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19 |
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1.51 |
1.88 |
52.4 |
-2.56 |
-0.51 |
21.5 |
82 |
5 |
7 |
7 |
1 |
2 |
2 |
0 |
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20 |
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1.12 |
2.14 |
15.3 |
-0.02 |
-0.19 |
7.0 |
83 |
1 |
0 |
1 |
4 |
1 |
0 |
0 |
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21 |
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1.12 |
2.18 |
20.1 |
-0.28 |
-0.58 |
4.4 |
81 |
1 |
0 |
1 |
3 |
1 |
0 |
0 |
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22 |
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1.12 |
1.12 |
16.9 |
-0.39 |
-0.59 |
4.2 |
78 |
1 |
0 |
1 |
2 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program