PDBsum entry 2osd Go to PDB code:  Tunnel analysis for: 2osd calculated with MOLE 2.0 PDB id 2osd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.15 24.6 2.85 1.03 5.6 68 1 2 0 6 3 1 1  MSE 78 A 2 1.26 2.19 24.6 1.72 0.64 3.2 66 1 0 1 4 4 1 1  MSE 78 A 3 1.24 2.17 24.8 2.65 0.94 0.9 76 0 0 1 8 4 1 1  MSE 78 A 4 1.28 2.17 26.7 2.72 0.95 0.7 78 0 0 1 9 4 1 1  MSE 78 A 5 1.23 2.16 32.6 2.74 1.08 2.2 67 0 1 0 7 5 1 1  MSE 62 A MSE 78 A 6 1.29 2.17 33.0 2.92 1.16 0.6 70 0 0 0 8 6 1 1  MSE 78 A 7 1.23 2.19 43.5 2.58 1.04 1.1 68 1 0 0 10 7 1 1  MSE 78 A EDO 167 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.