PDBsum entry 2oqw

Tunnel analysis for: 2oqw calculated with

MOLE 2.0

PDB id

2oqw

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.51

1.64

18.4

-1.06

-0.01

4.2

82

1

0

4

2

2

1

0

MSE 46 A

2

1.29

1.39

20.8

-1.13

-0.43

5.9

85

0

2

3

3

2

1

0

MSE 46 A MSE 115 A

3

1.26

1.85

24.5

-1.21

-0.27

12.8

81

2

2

3

2

2

1

0

MSE 46 A MSE 115 A

4

1.29

1.47

27.4

0.12

0.06

5.8

70

1

0

1

3

5

1

0

MSE 46 A MSE 147 A CS3 233 A

5

1.33

3.12

30.8

-0.70

-0.08

9.0

85

3

0

3

4

3

1

0

MSE 46 A MSE 142 A MSE 147 A

6

1.14

1.20

26.0

-0.06

-0.19

4.4

82

1

1

2

4

2

0

0

MSE 122 A

7

1.34

1.34

32.3

-0.32

-0.21

3.7

79

0

1

4

4

5

0

0

MSE 122 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.