spacer
spacer

PDBsum entry 2olo

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 2olo calculated with MOLE 2.0 PDB id
2olo
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.19 32.2 -0.44 -0.15 9.2 80 2 1 1 3 3 1 0  FAD 1001 A
2 1.18 1.18 38.1 -0.50 -0.02 14.7 79 4 1 2 3 4 0 1  FAD 1001 A
3 1.19 1.18 45.2 0.09 0.09 5.8 75 1 2 1 5 5 0 1  FAD 1001 A
4 1.18 1.18 49.0 -0.54 0.18 9.0 68 2 3 1 3 9 1 0  FAD 1001 A 6PC 2001 A MPD 3001 A MPD 3002 A
5 1.11 2.40 27.0 1.67 0.36 4.0 78 2 0 1 8 1 1 0  
6 1.30 1.35 16.5 1.01 0.50 3.1 72 0 1 0 5 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer