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PDBsum entry 2o1v

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2o1v calculated with MOLE 2.0 PDB id
2o1v
Pores calculated on whole structure Pores calculated excluding ligands

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11 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.55 2.43 32.2 -0.82 -0.13 11.8 81 4 2 3 2 4 0 0  
2 2.01 2.06 43.2 -1.66 -0.49 19.8 87 5 3 4 4 1 0 0  ADP 301 A MG 755 A
3 1.38 1.64 49.1 -1.48 -0.38 17.7 87 3 4 5 5 3 0 0  ADP 301 A MG 755 A
4 1.68 1.88 57.3 -0.65 -0.26 9.8 88 2 3 3 6 2 0 0  ADP 301 A MG 755 A
5 1.69 1.88 66.0 -0.56 -0.27 11.1 88 4 2 4 6 3 0 0  ADP 301 A MG 755 A
6 1.39 1.62 72.0 -0.73 -0.22 11.9 87 2 3 5 6 5 0 0  ADP 301 A MG 755 A
7 1.42 1.65 111.1 -1.46 -0.17 16.8 81 10 4 7 8 7 2 0  
8 2.06 2.29 111.8 -1.34 -0.16 16.3 81 11 3 7 8 6 2 0  
9 2.08 2.10 115.5 -1.81 -0.52 20.8 86 13 7 9 3 3 1 0  
10 2.13 2.79 118.8 -1.55 -0.30 18.0 82 9 5 8 9 5 2 0  ADP 301 A MG 755 A
11 1.67 1.94 151.9 -1.03 -0.24 13.2 85 9 5 11 11 6 3 0  ADP 301 A MG 755 A
12 1.66 1.93 153.5 -1.37 -0.47 17.5 86 11 9 10 5 4 1 0  ADP 301 A MG 755 A
13 1.45 1.67 78.8 -0.49 -0.17 14.8 84 2 5 4 4 3 0 0  ADP 302 B MG 755 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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