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PDBsum entry 2nyu
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Tunnel analysis for: 2nyu calculated with  MOLE 2.0
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PDB id
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2nyu
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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1 tunnel,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.89 |
2.06 |
16.7 |
0.74 |
-0.09 |
4.6 |
82 |
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0 |
1 |
0 |
4 |
0 |
1 |
0 |
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SAM 201 B
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2 |
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2.15 |
2.45 |
18.1 |
0.09 |
-0.24 |
9.2 |
78 |
2 |
1 |
2 |
5 |
0 |
2 |
0 |
SAM 201 B
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3 |
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1.93 |
2.01 |
21.1 |
-0.52 |
-0.45 |
11.9 |
86 |
4 |
2 |
3 |
5 |
0 |
1 |
0 |
SAM 201 B
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4 |
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1.93 |
2.04 |
22.2 |
0.06 |
-0.08 |
8.6 |
73 |
1 |
1 |
1 |
5 |
0 |
3 |
0 |
SAM 201 B
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5 |
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2.15 |
2.46 |
24.7 |
-0.25 |
-0.34 |
11.1 |
81 |
4 |
2 |
3 |
5 |
0 |
2 |
0 |
SAM 201 B
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6 |
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1.93 |
2.06 |
24.9 |
-0.61 |
-0.32 |
10.4 |
77 |
2 |
1 |
1 |
5 |
0 |
2 |
0 |
SAM 201 B
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7 |
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2.16 |
2.44 |
28.6 |
-0.37 |
-0.21 |
9.8 |
72 |
2 |
1 |
1 |
5 |
0 |
3 |
0 |
SAM 201 B
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8 |
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1.32 |
1.89 |
30.9 |
-0.72 |
-0.20 |
18.5 |
79 |
2 |
4 |
2 |
5 |
0 |
1 |
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SAM 201 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program