PDBsum entry 2nyl Go to PDB code:  Pore analysis for: 2nyl calculated with MOLE 2.0 PDB id 2nyl Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 2.04 29.0 -1.68 -0.45 30.1 76 5 4 1 2 0 1 0   2 1.79 1.95 39.5 -1.81 -0.66 23.9 84 3 1 1 2 0 0 0  MSE 528 A 3 1.15 1.14 45.7 -0.36 -0.14 13.3 71 3 4 3 4 3 0 2  MSE 66 E MSE 88 E 4 2.50 2.50 47.6 -2.28 -0.52 35.2 80 8 9 1 2 1 0 0   5 2.43 2.43 52.5 -1.57 -0.46 25.4 81 8 7 1 3 2 1 0   6 2.04 2.04 67.0 -2.01 -0.33 21.1 76 7 5 3 4 4 1 0  ACB 3 H 1ZN 5 H FGA 6 H DAM 7 H 7 1.12 1.22 68.9 -1.72 -0.36 23.6 85 8 4 4 3 1 1 0   8 1.19 1.42 89.0 -1.44 -0.12 22.9 79 7 9 4 4 3 2 1  MSE 499 A 9 1.17 1.43 92.3 -0.85 -0.11 15.7 80 7 6 4 8 6 0 0  MSE 180 A 10 1.21 1.42 94.8 -0.85 -0.08 19.4 77 3 8 1 10 3 2 0  MSE 277 B 11 1.22 1.40 106.1 -1.88 -0.23 23.5 79 9 7 6 2 4 2 0   12 1.61 1.80 143.0 -1.71 -0.41 20.2 80 10 8 11 6 5 6 1   13 1.27 1.42 157.4 -0.46 0.08 15.5 78 13 4 8 14 8 3 1  MSE 66 E MSE 88 E 14 1.29 1.35 229.6 -0.75 -0.13 16.2 79 12 9 10 16 9 5 2  MSE 66 E MSE 88 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.