PDBsum entry 2nvd Go to PDB code:  Tunnel analysis for: 2nvd calculated with MOLE 2.0 PDB id 2nvd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.13 2.36 18.9 -1.75 -0.29 20.7 77 2 2 2 1 3 1 0  NAP 500 A 2 2.33 4.70 22.0 0.11 0.73 4.9 63 1 1 2 3 6 1 1  NAP 500 A ITB 600 A 3 2.33 4.69 23.9 -0.33 0.79 7.8 64 2 1 2 3 6 1 1  NAP 500 A ITB 600 A 4 2.00 2.28 24.6 -0.86 -0.10 16.7 78 3 3 2 4 3 1 0  NAP 500 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.