spacer
spacer

PDBsum entry 2nqr

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2nqr calculated with MOLE 2.0 PDB id
2nqr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.09 2.10 38.2 -0.73 -0.10 13.7 92 5 0 4 3 0 2 0  
2 1.64 2.16 38.5 0.94 0.10 1.6 90 0 0 3 7 1 2 0  
3 1.68 1.93 41.1 -1.35 -0.19 15.0 93 5 0 6 5 1 2 0  
4 2.10 2.12 42.4 -0.18 -0.14 4.8 83 2 1 4 4 1 4 0  
5 1.87 1.86 88.2 0.19 -0.22 2.4 86 1 0 7 14 2 6 0  GOL 912 A GOL 914 A GOL 909 B GOL 916 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer