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PDBsum entry 2nqb
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Pore analysis for: 2nqb calculated with  MOLE 2.0
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PDB id
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2nqb
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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20 pores,
coloured by radius |
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20 pores,
coloured by radius
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20 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.84 |
4.01 |
26.4 |
-1.71 |
-0.77 |
18.6 |
77 |
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3 |
1 |
1 |
0 |
0 |
0 |
0 |
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DT 6 I DA 7 I DT 8 I DG 18 I DT 92 I DG 205 J DC
206 J DG 280 J DG 281 J DT 282 J DG 283 J DG 284 J
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2 |
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3.63 |
3.63 |
29.6 |
-2.64 |
-0.56 |
32.0 |
74 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
DT 6 I DA 7 I DT 8 I DC 10 I DA 11 I DC 12 I DC
13 I DG 205 J DC 278 J DA 279 J DG 280 J DG 281 J
DT 282 J DG 283 J DG 284 J
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3 |
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3.66 |
3.66 |
30.5 |
-2.04 |
-0.66 |
22.1 |
83 |
5 |
0 |
2 |
0 |
0 |
0 |
0 |
DC 10 I DA 11 I DC 12 I DC 13 I DG 18 I DT 92 I
DG 277 J DC 278 J DA 279 J DG 280 J
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4 |
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2.02 |
2.02 |
31.2 |
-2.55 |
-0.64 |
29.7 |
74 |
3 |
1 |
0 |
0 |
0 |
1 |
0 |
DT 6 I DA 7 I DT 8 I DT 80 I DC 84 I DG 205 J DC
206 J DA 207 J DT 208 J DG 209 J DT 210 J DT 282
J DG 283 J DG 284 J
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5 |
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3.63 |
3.63 |
33.4 |
-1.88 |
-0.64 |
22.4 |
74 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
DC 10 I DA 11 I DC 12 I DC 13 I DT 92 I DT 93 I
DG 204 J DG 205 J DC 206 J DC 278 J DA 279 J DG
280 J DG 281 J
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6 |
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3.44 |
3.44 |
37.6 |
-1.89 |
-0.51 |
21.2 |
89 |
6 |
2 |
5 |
1 |
1 |
0 |
0 |
DG 18 I DA 29 I DA 102 I DG 185 J DC 195 J
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7 |
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1.70 |
1.75 |
48.6 |
-0.89 |
-0.39 |
14.0 |
83 |
5 |
1 |
4 |
4 |
0 |
0 |
0 |
DG 18 I DT 91 I DT 92 I DT 93 I DC 195 J DT 198 J
DC 199 J
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8 |
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3.84 |
3.84 |
49.9 |
-1.75 |
-0.66 |
20.6 |
85 |
3 |
1 |
2 |
1 |
0 |
0 |
0 |
DG 59 I DC 60 I DA 61 I DG 63 I DG 134 I DG 135 I
DT 136 I DA 153 J DT 154 J DC 155 J DG 164 J DT
226 J DG 227 J DA 228 J DA 229 J DC 230 J DA 231
J DT 239 J DG 240 J
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9 |
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2.25 |
2.61 |
63.7 |
-1.73 |
-0.66 |
17.6 |
87 |
6 |
1 |
5 |
1 |
0 |
1 |
0 |
DA 133 I DG 134 I DT 142 I DT 143 I DG 144 I DT
154 J DC 155 J DC 156 J DG 164 J DT 239 J DG 240 J
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10 |
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1.68 |
1.99 |
70.1 |
-1.77 |
-0.54 |
19.5 |
76 |
8 |
0 |
1 |
1 |
0 |
2 |
0 |
DT 8 I DC 9 I DC 10 I DA 11 I DC 12 I DC 13 I DA
72 I DG 216 J DG 277 J DC 278 J DG 280 J DT 288 J
DT 289 J
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11 |
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2.50 |
3.10 |
71.0 |
-1.58 |
-0.63 |
18.5 |
89 |
7 |
4 |
7 |
2 |
1 |
0 |
0 |
DG 39 I DC 49 I DA 113 I DC 114 I DG 164 J DA 175
J DT 184 J DG 185 J DG 240 J DA 259 J
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12 |
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1.30 |
1.30 |
74.8 |
-0.98 |
-0.51 |
13.3 |
75 |
6 |
0 |
0 |
2 |
0 |
1 |
0 |
DC 66 I DA 67 I DG 68 I DC 69 I DG 70 I DG 71 I D
A 72 I DA 73 I DA 145 I DT 146 I DG 216 J DG 224
J DC 225 J DT 226 J DG 227 J DA 228 J
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13 |
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1.28 |
1.26 |
123.6 |
-1.75 |
-0.49 |
18.7 |
83 |
12 |
3 |
5 |
4 |
0 |
3 |
0 |
DA 72 I DA 73 I DT 74 I DT 142 I DT 143 I DG 144
I DT 154 J DC 155 J DG 216 J DA 218 J DA 219 J DT
220 J
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14 |
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1.23 |
1.23 |
137.5 |
-1.43 |
-0.41 |
17.2 |
83 |
12 |
3 |
5 |
6 |
0 |
3 |
0 |
DC 66 I DA 67 I DG 68 I DC 69 I DT 142 I DT 143 I
DG 144 I DA 145 I DT 146 I DT 154 J DC 155 J DA
219 J DT 220 J DG 227 J DA 228 J
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15 |
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2.00 |
2.34 |
135.8 |
-1.75 |
-0.51 |
18.4 |
85 |
11 |
3 |
9 |
5 |
0 |
2 |
0 |
DA 72 I DA 73 I DT 74 I DA 133 I DG 134 I DC 156
J DG 164 J DG 216 J DA 218 J DA 219 J DT 220 J DT
239 J DG 240 J
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16 |
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1.25 |
1.25 |
147.6 |
-1.44 |
-0.45 |
16.5 |
85 |
13 |
3 |
9 |
7 |
0 |
3 |
0 |
DC 66 I DA 67 I DG 68 I DC 69 I DA 133 I DG 134 I
DA 145 I DT 146 I DC 156 J DG 164 J DA 219 J DT
220 J DG 227 J DA 228 J DT 239 J DG 240 J
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17 |
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2.03 |
2.26 |
154.7 |
-2.09 |
-0.48 |
23.4 |
81 |
12 |
4 |
7 |
5 |
1 |
3 |
0 |
DG 59 I DC 60 I DA 61 I DA 72 I DA 73 I DT 74 I D
A 133 I DG 134 I DA 153 J DT 154 J DC 155 J DC
156 J DG 216 J DA 218 J DA 219 J DT 220 J DT 226
J DG 227 J DA 228 J DA 229 J DC 230 J DA 231 J
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18 |
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2.33 |
2.45 |
159.7 |
-2.20 |
-0.45 |
29.1 |
82 |
18 |
4 |
6 |
4 |
1 |
1 |
0 |
DA 29 I DA 72 I DA 73 I DT 74 I DA 102 I DG 103 I
DT 104 I DG 185 J DG 186 J DA 188 J DA 189 J DG
216 J DA 218 J DA 219 J DT 220 J DA 259 J
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19 |
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1.48 |
1.44 |
175.0 |
-2.15 |
-0.55 |
24.4 |
83 |
21 |
6 |
10 |
3 |
2 |
4 |
0 |
DG 18 I DA 102 I DG 103 I DT 142 I DT 143 I DG
144 I DT 154 J DC 155 J DA 188 J DA 189 J DC 195 J
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20 |
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1.29 |
1.29 |
199.9 |
-1.79 |
-0.43 |
23.5 |
84 |
20 |
4 |
10 |
7 |
2 |
2 |
0 |
DG 18 I DC 66 I DA 67 I DG 68 I DC 69 I DA 102 I
DG 103 I DA 145 I DT 146 I DA 188 J DA 189 J DC
195 J DA 219 J DT 220 J DG 227 J DA 228 J
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program