PDBsum entry 2npf

Pore analysis for: 2npf calculated with

MOLE 2.0

PDB id

2npf

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

5 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.68

2.84

30.1

0.96

0.35

9.4

73

3

1

1

3

2

0

1

2

1.79

2.68

51.1

-1.05

-0.41

14.7

81

1

7

5

2

3

1

0

MOU 1901 B

3

3.07

3.99

83.5

-0.56

-0.12

17.4

74

5

6

2

5

4

1

1

4

1.99

1.99

105.6

-1.50

-0.26

21.7

73

9

4

3

3

5

2

0

GDP 1902 B

5

1.17

2.66

295.8

-0.75

-0.14

17.9

81

15

10

10

13

5

2

0

GDP 1902 B

6

1.82

2.01

40.8

-1.43

-0.36

17.5

79

7

2

5

3

3

1

0

7

1.80

2.02

43.2

-1.48

-0.49

15.4

80

6

2

5

3

2

1

0

8

1.65

2.80

52.7

-1.11

-0.13

21.7

79

4

6

1

5

2

1

0

9

1.72

2.81

109.3

0.32

0.12

8.7

76

4

5

6

11

6

4

1

MOU 901 A

10

1.68

2.81

127.9

-0.60

-0.12

12.6

80

7

4

7

9

4

4

0

MOU 901 A

11

1.75

1.85

145.8

-0.85

-0.24

12.2

82

7

6

11

9

5

4

0

MOU 901 A

12

1.25

2.49

251.2

-0.57

0.03

18.9

79

14

11

8

15

7

5

1

MOU 901 A GDP 902 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.