 |
PDBsum entry 2n4b
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2n4b calculated with MOLE 2.0
|
PDB id
|
|
|
|
2n4b
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
5 tunnels,
coloured by tunnel radius |
 |
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.19 |
1.61 |
22.6 |
1.05 |
1.08 |
1.1 |
67 |
 |
0 |
0 |
1 |
3 |
6 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.20 |
1.55 |
23.4 |
1.65 |
1.31 |
0.9 |
59 |
0 |
0 |
1 |
2 |
9 |
0 |
0 |
|
 |
3 |
 |
1.18 |
3.33 |
25.1 |
0.67 |
0.95 |
1.4 |
67 |
0 |
0 |
1 |
3 |
6 |
0 |
0 |
|
 |
4 |
 |
1.44 |
1.44 |
17.0 |
0.89 |
0.36 |
14.9 |
87 |
3 |
1 |
0 |
6 |
1 |
0 |
0 |
|
 |
5 |
 |
1.58 |
1.59 |
21.9 |
1.82 |
0.42 |
6.0 |
82 |
1 |
0 |
0 |
8 |
1 |
1 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |