spacer
spacer

PDBsum entry 2lp3

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2lp3 calculated with MOLE 2.0 PDB id
2lp3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.22 2.50 31.7 1.94 0.97 1.6 73 1 0 1 7 6 0 0  
2 1.23 2.62 34.0 1.79 0.90 0.9 74 0 0 1 7 5 0 0  
3 1.21 2.60 36.1 1.77 0.94 1.3 75 0 1 2 7 5 0 0  
4 1.21 2.60 36.1 1.77 0.94 1.3 75 0 1 2 7 5 0 0  
5 1.23 2.52 41.5 2.27 0.85 1.3 75 1 0 1 12 8 0 0  
6 1.23 2.52 43.8 2.18 0.80 0.8 75 0 0 1 12 7 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer