PDBsum entry 2lkd Go to PDB code:  Tunnel analysis for: 2lkd calculated with MOLE 2.0 PDB id 2lkd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 2.96 18.0 1.53 0.44 6.7 89 0 1 1 7 1 2 0   2 1.33 2.31 24.7 2.31 0.84 6.0 87 0 1 0 9 1 1 0   3 1.24 2.96 29.5 0.29 0.20 12.5 88 2 1 1 6 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.