 |
PDBsum entry 2kup
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Signaling protein/oncoprotein
|
PDB id
|
|
|
|
2kup
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Generate full PROCHECK analyses
|
PROCHECK summary for 2kup
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 119 85.6%*
Additional allowed regions [a,b,l,p] 19 13.7%
Generously allowed regions [~a,~b,~l,~p] 1 0.7%
Disallowed regions [XX] 0 0.0%
---- ------
Non-glycine and non-proline residues 139 100.0%
End-residues (excl. Gly and Pro) 3
Glycine residues 13
Proline residues 10
----
Total number of residues 165
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.59*
Chi1-chi2 distribution -0.46
Chi1 only -0.05
Chi3 & chi4 0.50
Omega -0.63*
-0.42
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.45
Main-chain bond angles -0.04
0.17
=====
OVERALL AVERAGE -0.18
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
|
|
|
