PDBsum entry 2kdo Go to PDB code:  Tunnel analysis for: 2kdo calculated with MOLE 2.0 PDB id 2kdo Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.12 16.2 1.70 0.46 5.1 83 1 1 2 7 2 0 0   2 1.16 2.63 15.5 1.15 0.74 10.4 79 2 0 0 3 2 0 0   3 1.55 1.55 18.3 1.15 -0.04 2.1 78 0 0 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.