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PDBsum entry 2k2f

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protein metals Protein-protein interface(s) links
Metal binding protein PDB id
2k2f

 

 

 

 

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Contents
Protein chains
12 a.a.
93 a.a. *
Metals
_CA ×4
* Residue conservation analysis
PDB id:
2k2f
Name: Metal binding protein
Title: Solution structure of ca2+-s100a1-ryrp12
Structure: Ryanodine receptor 1 peptide. Chain: c, d. Engineered: yes. Protein s100-a1. Chain: a, b. Synonym: s100 calcium-binding protein a1, s-100 protein alpha subunit, s-100 protein alpha chain. Engineered: yes
Source: Rattus norvegicus. Rat. Gene: ryr1. Expressed in: escherichia coli. Gene: s100a1.
NMR struc: 20 models
Authors: N.T.Wright,K.M.Varney,D.J.Weber
Key ref:
N.T.Wright et al. (2008). S100A1 and calmodulin compete for the same binding site on ryanodine receptor. J Biol Chem, 283, 26676-26683. PubMed id: 18650434 DOI: 10.1074/jbc.M804432200
Date:
01-Apr-08     Release date:   29-Jul-08    
PROCHECK
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 Headers
 References

Protein chains
B0LPN4  (RYR2_RAT) -  Ryanodine receptor 2 from Rattus norvegicus
Seq:
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Seq:
Struc:
4955 a.a.
12 a.a.
Protein chains
Pfam   ArchSchema ?
P35467  (S10A1_RAT) -  Protein S100-A1 from Rattus norvegicus
Seq:
Struc:
94 a.a.
93 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1074/jbc.M804432200 J Biol Chem 283:26676-26683 (2008)
PubMed id: 18650434  
 
 
S100A1 and calmodulin compete for the same binding site on ryanodine receptor.
N.T.Wright, B.L.Prosser, K.M.Varney, D.B.Zimmer, M.F.Schneider, D.J.Weber.
 
  ABSTRACT  
 
In heart and skeletal muscle an S100 protein family member, S100A1, binds to the ryanodine receptor (RyR) and promotes Ca(2+) release. Using competition binding assays, we further characterized this system in skeletal muscle and showed that Ca(2+)-S100A1 competes with Ca(2+)-calmodulin (CaM) for the same binding site on RyR1. In addition, the NMR structure was determined for Ca(2+)-S100A1 bound to a peptide derived from this CaM/S100A1 binding domain, a region conserved in RyR1 and RyR2 and termed RyRP12 (residues 3616-3627 in human RyR1). Examination of the S100A1-RyRP12 complex revealed residues of the helical RyRP12 peptide (Lys-3616, Trp-3620, Lys-3622, Leu-3623, Leu-3624, and Lys-3626) that are involved in favorable hydrophobic and electrostatic interactions with Ca(2+)-S100A1. These same residues were shown previously to be important for RyR1 binding to Ca(2+)-CaM. A model for regulating muscle contraction is presented in which Ca(2+)-S100A1 and Ca(2+)-CaM compete directly for the same binding site on the ryanodine receptor.
 
  Selected figure(s)  
 
Figure 4.
FIGURE 4. Residues of the RyRP12 peptide (residues 3616-3627 or RyR1) and S100A1 involved in Ca^2^+-S100A1-RyRP12 complex formation. A, diagram illustrating hydrophobic residues involved in the RyRP12-S100A1 interaction including Ala-53, Ile-57, Leu-77, Ala-80, Leu-81, and Ala-84 of S100A1, and Trp-3620, Leu-3623, and Leu-3624 of RyRP12. B, ribbon diagram illustrating hydrophilic residues in the RyRP12-S100A1 complex that are likely involved in ionic interactions, including Asp-52 and Glu-63 on S100A1 and Lys-3616, Lys-3622, and Lys-3627 on the RyRP12 peptide. C, space-filling diagram of the S100A1-RyP12 peptide showing residues in green (Trp-3620 and Leu-3624) that are important for calmodulin binding to the ryanodine receptor. The rest of the RyRP12 peptide is colored in red, and the S100A1 subunits 1 and 2 are colored tan and blue, respectively. D, ribbon diagram of the C-terminal region of CaM bound to the CaMBD of the RyR (residues 3614-3643 of RyR; Protein Data Bank code 2BCX) (17), showing side chains of the RyR that are involved in ionic interactions with CaM; these same residues are also likely to form salt bridges with negatively charged side chains of Ca^2+-S100A1.
Figure 5.
FIGURE 5. Schematic of S100A1 function in skeletal muscle. Ca^2+-S100A1 and Ca^2+-CaM bind to an overlapping region of RyR1 (red) in a Ca^2+-dependent manner. S100A1 binding leads to events that enhance SR calcium release. In contrast, calmodulin binding to this CaM binding domain leads to events that reduce SR calcium release. Competition between these two calcium-binding proteins for this target site may regulate SR Ca^2+ release in skeletal muscle. The asterisk close to the Ca^2+-S100A1-RyRP12 structure denotes the location of the residues of RyR that are C-terminal to RyRP12 (residues 3616-3627 of RyR) present in the longer RyR peptide (residues 3614-3643 of RyR), used for structural studies when bound to CaM.
 
  The above figures are reprinted by permission from the ASBMB: J Biol Chem (2008, 283, 26676-26683) copyright 2008.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
20732326 D.Rohde, H.Brinks, J.Ritterhoff, G.Qui, S.Ren, and P.Most (2011).
S100A1 gene therapy for heart failure: A novel strategy on the verge of clinical trials.
  J Mol Cell Cardiol, 50, 777-784.  
20934451 D.W.Song, J.G.Lee, H.S.Youn, S.H.Eom, and d.o. .H.Kim (2011).
Ryanodine receptor assembly: A novel systems biology approach to 3D mapping.
  Prog Biophys Mol Biol, 105, 145-161.  
20351179 B.Gilquin, B.R.Cannon, A.Hubstenberger, B.Moulouel, E.Falk, N.Merle, N.Assard, S.Kieffer, D.Rousseau, P.T.Wilder, D.J.Weber, and J.Baudier (2010).
The calcium-dependent interaction between S100B and the mitochondrial AAA ATPase ATAD3A and the role of this complex in the cytoplasmic processing of ATAD3A.
  Mol Cell Biol, 30, 2724-2736.  
  20827422 D.B.Zimmer, and D.J.Weber (2010).
The Calcium-Dependent Interaction of S100B with Its Protein Targets.
  Cardiovasc Psychiatry Neurol, 2010, 0.  
20070253 I.Matsuura, C.Y.Lai, and K.N.Chiang (2010).
Functional interaction between Smad3 and S100A4 (metastatin-1) for TGF-beta-mediated cancer cell invasiveness.
  Biochem J, 426, 327-335.  
19931307 I.N.Pessah, G.Cherednichenko, and P.J.Lein (2010).
Minding the calcium store: Ryanodine receptor activation as a convergent mechanism of PCB toxicity.
  Pharmacol Ther, 125, 260-285.  
20368797 M.Völkers, D.Rohde, C.Goodman, and P.Most (2010).
S100A1: a regulator of striated muscle sarcoplasmic reticulum Ca2+ handling, sarcomeric, and mitochondrial function.
  J Biomed Biotechnol, 2010, 178614.  
20042072 B.A.McGivney, S.S.Eivers, D.E.MacHugh, J.N.MacLeod, G.M.O'Gorman, S.D.Park, L.M.Katz, and E.W.Hill (2009).
Transcriptional adaptations following exercise in thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy.
  BMC Genomics, 10, 638.  
19538970 C.Kraus, D.Rohde, C.Weidenhammer, G.Qiu, S.T.Pleger, M.Voelkers, M.Boerries, A.Remppis, H.A.Katus, and P.Most (2009).
S100A1 in cardiovascular health and disease: closing the gap between basic science and clinical therapy.
  J Mol Cell Cardiol, 47, 445-455.  
19657060 E.O.Hernández-Ochoa, B.L.Prosser, N.T.Wright, M.Contreras, D.J.Weber, and M.F.Schneider (2009).
Augmentation of Cav1 channel current and action potential duration after uptake of S100A1 in sympathetic ganglion neurons.
  Am J Physiol Cell Physiol, 297, C955-C970.  
19452629 N.T.Wright, B.R.Cannon, P.T.Wilder, M.T.Morgan, K.M.Varney, D.B.Zimmer, and D.J.Weber (2009).
Solution structure of S100A1 bound to the CapZ peptide (TRTK12).
  J Mol Biol, 386, 1265-1277.  
19913485 P.A.Lobo, and F.Van Petegem (2009).
Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: insights into disease mutations.
  Structure, 17, 1505-1514.
PDB codes: 3ila 3im5 3im6 3im7
18949447 N.T.Wright, K.G.Inman, J.A.Levine, B.R.Cannon, K.M.Varney, and D.J.Weber (2008).
Refinement of the solution structure and dynamic properties of Ca(2+)-bound rat S100B.
  J Biomol NMR, 42, 279-286.
PDB code: 2k7o
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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