spacer
spacer

PDBsum entry 2k1e

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 2k1e calculated with MOLE 2.0 PDB id
2k1e
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.74 2.72 42.9 1.35 0.37 11.8 82 1 5 0 12 2 0 0  
2 1.64 1.64 42.9 0.68 -0.11 4.6 86 0 2 0 10 3 0 0  
3 1.47 2.50 47.1 -0.01 -0.23 8.3 82 2 2 1 6 3 0 0  
4 1.66 1.66 52.2 0.41 -0.08 6.2 83 1 3 0 9 5 0 0  
5 1.60 2.20 75.4 0.49 0.01 14.3 85 2 7 0 17 2 0 0  
6 1.67 2.21 76.5 0.32 0.00 15.7 85 3 8 1 15 2 0 0  
7 1.63 1.63 83.1 -0.05 -0.26 8.7 85 2 5 0 11 5 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer