PDBsum entry 2k1e Go to PDB code:  Tunnel analysis for: 2k1e calculated with MOLE 2.0 PDB id 2k1e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.49 24.7 0.46 0.13 11.3 81 2 1 1 6 2 0 0   2 1.25 1.45 27.9 0.40 0.06 14.2 85 1 3 1 7 2 0 0   3 1.33 1.32 30.0 -0.63 -0.05 13.8 75 2 4 0 4 3 1 0   4 1.39 2.27 30.8 -0.92 0.00 6.8 72 1 3 0 2 4 1 0   5 1.33 1.39 31.6 -0.77 0.24 13.7 75 2 5 0 4 3 1 0   6 1.25 1.47 37.5 -0.16 -0.39 2.7 83 0 0 0 3 4 0 0   7 1.25 1.47 40.0 1.08 0.16 6.1 88 0 3 0 7 3 0 0   8 1.25 1.46 41.1 1.65 0.37 4.6 87 0 2 0 12 3 0 0   9 1.25 1.48 42.3 1.64 0.37 3.9 87 0 2 0 11 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.