PDBsum entry 2jkd Go to PDB code:  Tunnel analysis for: 2jkd calculated with MOLE 2.0 PDB id 2jkd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 2.47 28.9 -0.58 -0.02 17.5 82 3 2 2 7 1 1 0   2 1.31 2.64 31.9 -0.33 0.17 16.9 83 5 1 2 8 2 1 0   3 1.74 3.56 15.2 -1.15 0.22 12.0 74 1 1 0 1 2 0 0   4 1.94 2.16 22.8 -1.98 -0.14 23.6 76 2 2 0 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.