PDBsum entry 2jer Go to PDB code:  Tunnel analysis for: 2jer calculated with MOLE 2.0 PDB id 2jer Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.36 67.5 -1.54 -0.38 19.6 80 7 7 4 5 2 3 1   2 1.16 1.26 68.2 -1.45 -0.37 19.0 79 6 6 4 6 2 3 1   3 1.22 1.34 98.9 -1.18 -0.31 18.1 80 7 8 7 9 2 5 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.