PDBsum entry 2jd8 Go to PDB code:  Pore analysis for: 2jd8 calculated with MOLE 2.0 PDB id 2jd8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.45 37.7 0.70 0.21 9.1 66 3 0 1 8 2 3 0   2 1.58 3.90 88.0 -0.67 0.14 19.4 75 7 11 7 11 7 4 0   3 1.64 2.73 111.4 -1.90 -0.37 25.6 73 11 13 5 4 7 2 0  SO4 1171 O 4 2.17 2.22 118.6 -2.58 -0.50 28.8 74 12 15 5 1 6 2 0  SO4 1671 3 SO4 1668 Y 5 1.65 2.67 128.8 -1.10 -0.40 19.2 80 6 9 6 9 4 2 0   6 1.52 4.07 137.3 -2.82 -0.36 29.5 74 15 12 6 0 6 0 0   7 1.58 4.05 134.4 -2.54 -0.47 28.2 79 11 10 6 4 4 1 0   8 1.62 2.69 138.5 -2.31 -0.44 28.3 77 14 10 5 7 6 0 0   9 1.62 2.74 141.2 -1.80 -0.52 25.0 80 13 9 4 11 4 1 0  SO4 1668 Z 10 1.62 2.68 141.5 -2.36 -0.46 28.7 77 17 9 5 6 5 0 0   11 2.29 2.35 141.3 -1.91 -0.56 23.5 81 9 10 5 9 3 2 0  SO4 1668 Z 12 1.66 4.09 143.4 -2.40 -0.46 27.4 76 18 12 5 5 5 1 0  SO4 1668 Z 13 1.62 2.72 143.9 -1.91 -0.53 25.9 80 17 9 5 12 4 1 0  SO4 1671 3 14 1.66 4.07 145.6 -2.45 -0.46 28.0 77 19 12 6 6 5 1 0  SO4 1671 3 15 2.02 2.09 146.1 -1.99 -0.56 24.7 81 12 10 6 10 3 2 0  SO4 1671 3 16 1.66 4.30 151.7 -2.28 -0.39 25.9 77 15 12 6 5 5 2 0  SO4 1171 O 17 1.34 1.36 163.1 -1.83 -0.50 25.6 80 17 12 5 12 3 1 0   18 1.14 1.14 160.6 -1.82 -0.53 23.4 82 13 13 6 10 2 2 0   19 2.25 3.15 166.5 -1.85 -0.50 22.9 75 12 12 5 7 6 3 0  SO4 1671 3 20 1.55 4.06 170.0 -2.46 -0.46 27.7 72 19 12 5 1 7 2 0   21 2.29 2.35 172.1 -2.00 -0.51 24.7 74 17 12 4 6 6 3 0  SO4 1668 Z 22 1.58 4.00 175.4 -2.57 -0.55 28.3 76 17 14 6 1 5 1 0  SO4 1668 Y 23 2.08 2.13 179.5 -2.27 -0.62 27.1 78 17 14 5 6 4 2 0  SO4 1668 Y SO4 1668 Z 24 1.72 4.43 182.9 -2.49 -0.49 27.5 76 17 16 6 2 6 1 0  SO4 1668 Y 25 1.70 2.74 186.9 -2.16 -0.58 27.9 78 19 13 5 8 5 1 0  SO4 1668 Y 26 2.29 2.29 186.3 -1.91 -0.46 23.9 74 19 12 5 6 6 4 0  SO4 1171 O 27 2.01 2.98 188.3 -2.13 -0.63 25.2 79 15 14 6 6 4 2 0  SO4 1668 Y 28 1.13 1.15 192.4 -1.99 -0.50 25.1 76 20 16 5 7 5 3 0   29 1.36 1.38 191.3 -2.00 -0.60 24.1 79 16 15 6 7 3 2 0  SO4 1668 Y 30 2.13 3.03 211.0 -2.18 -0.57 25.9 74 18 16 5 3 7 3 0  SO4 1668 Y Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.