PDBsum entry 2jcl Go to PDB code:  Tunnel analysis for: 2jcl calculated with MOLE 2.0 PDB id 2jcl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.39 16.1 -1.13 0.07 25.2 73 2 4 0 3 4 0 0   2 1.20 1.38 36.0 -1.16 0.13 23.1 78 5 4 1 5 4 2 0   3 1.22 1.39 42.5 -1.39 -0.32 20.1 81 7 9 3 7 4 0 0   4 1.65 1.75 19.1 -0.05 -0.05 9.5 84 3 2 1 4 0 2 0   5 1.67 1.92 20.4 0.19 -0.04 5.0 90 3 1 1 5 0 3 0   6 1.11 1.15 24.0 1.35 0.38 4.2 81 1 1 2 8 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.