PDBsum entry 2ja8 Go to PDB code:  Pore analysis for: 2ja8 calculated with MOLE 2.0 PDB id 2ja8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.47 36.2 -0.81 0.06 16.4 64 3 1 2 1 5 0 0   2 1.17 1.26 48.1 -0.63 -0.19 12.7 84 4 3 2 4 1 4 0   3 1.84 2.75 52.1 -1.18 -0.29 21.1 83 5 5 3 6 0 1 0   4 3.75 3.94 57.1 -1.66 -0.47 23.2 85 10 1 3 4 0 0 0  DA 1 N DA 2 N DC 14 T DT 15 T 5 1.14 1.33 58.7 -2.28 -0.44 25.5 81 5 9 2 2 2 2 0   6 1.12 1.56 64.3 -0.88 -0.19 18.4 81 7 5 3 8 1 0 0   7 1.29 1.28 95.0 -1.25 -0.48 19.4 88 9 4 5 4 1 0 0   8 3.05 3.25 102.4 -1.95 -0.55 25.2 85 7 8 2 5 0 1 0  U 0 P U 1 P C 2 P G 3 P A 4 P C 5 P DC 14 T DT 15 T DT 16 T DT 18 T DG 23 T DT 25 T DC 26 T 9 1.33 1.34 109.2 -2.16 -0.73 23.6 84 9 8 8 2 0 2 0   10 1.47 1.72 131.9 -1.53 -0.41 15.3 85 8 4 7 9 1 7 0  DA 2 N DG 3 N DT 4 N DA 10 T DG 11 T DT 12 T DA 13 T DC 14 T DT 15 T 11 1.23 1.31 135.0 -1.59 -0.45 21.6 79 8 8 6 8 2 2 0   12 1.75 2.01 140.9 -2.10 -0.49 26.6 80 16 14 8 8 4 3 0   13 1.49 1.74 142.7 -1.78 -0.42 18.4 85 17 4 10 11 1 7 0  DA 2 N DG 3 N DT 4 N DA 10 T DG 11 T DT 12 T 14 1.33 1.32 150.6 -1.16 -0.34 16.1 81 12 11 10 10 3 3 0   15 1.44 1.49 153.3 -1.65 -0.46 21.7 83 18 11 10 6 3 3 0   16 1.39 3.17 157.6 -1.96 -0.48 25.7 87 12 8 9 7 1 0 0  U 0 P U 1 P C 2 P G 3 P A 4 P C 5 P DC 14 T DT 15 T DT 16 T DT 18 T DG 23 T DT 25 T DC 26 T DA 27 T DT 28 T DT 29 T 17 1.83 1.88 158.9 -1.75 -0.42 23.7 81 16 10 7 11 3 4 0  U 0 P U 1 P C 2 P G 3 P A 4 P C 5 P DC 14 T DT 15 T DT 16 T DT 18 T DG 23 T DT 25 T DC 26 T 18 1.22 1.20 160.0 -1.67 -0.48 21.6 81 14 9 7 8 2 2 0   19 2.25 2.25 164.8 -2.16 -0.62 25.9 84 15 14 7 8 2 2 0  U 0 P U 1 P C 2 P G 3 P A 4 P C 5 P C 6 P A 9 P DT 18 T TT 19 T DC 21 T DG 23 T DT 25 T DC 26 T 20 1.22 1.37 169.5 -1.78 -0.46 24.1 84 14 7 5 7 1 4 0   21 1.30 3.29 174.9 -2.23 -0.51 27.2 85 18 12 11 8 2 1 0  U 0 P DT 28 T DT 29 T 22 1.21 3.04 188.9 -1.70 -0.42 20.0 85 18 11 17 12 4 5 0  U 0 P DT 28 T DT 29 T 23 1.32 1.35 192.0 -1.59 -0.45 21.4 81 18 18 10 14 2 5 0   24 1.82 1.87 201.2 -2.23 -0.58 25.0 82 25 9 12 8 2 2 0  DA 2 N DG 3 N DT 4 N DA 5 N DC 6 N DA 10 T DG 11 T DT 12 T 25 1.28 1.30 212.3 -1.76 -0.47 20.5 82 25 10 13 14 2 2 0  DA 2 N DG 3 N DT 4 N DA 5 N DC 6 N DA 10 T DG 11 T DT 12 T 26 1.23 3.17 231.4 -2.01 -0.42 25.6 83 27 14 16 14 5 4 0  U 0 P DT 28 T DT 29 T 27 1.20 1.25 260.8 -0.84 -0.28 15.6 84 17 13 20 23 5 1 0   28 1.29 3.23 292.6 -1.31 -0.37 18.7 82 30 16 15 24 3 6 1  U 0 P DT 28 T DT 29 T 29 1.18 1.56 335.3 -1.18 -0.24 19.6 84 24 13 17 27 4 5 0  U 0 P U 1 P C 2 P G 3 P A 4 P C 5 P DT 16 T DT 18 T DG 23 T DT 25 T DC 26 T 30 1.43 3.16 339.9 -1.17 -0.27 18.4 84 28 11 21 26 5 4 1  U 0 P DT 28 T DT 29 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.