PDBsum entry 2ja7 Go to PDB code:  Pore analysis for: 2ja7 calculated with MOLE 2.0 PDB id 2ja7 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.11 2.64 30.0 -2.07 -0.52 27.6 89 3 3 3 3 0 2 0   2 1.31 1.51 36.4 -0.81 0.06 16.4 64 3 1 2 1 5 0 0   3 1.39 1.59 73.5 -1.65 -0.19 21.1 77 5 5 4 8 2 5 0   4 2.75 3.58 99.9 -1.53 -0.47 21.4 86 15 6 8 8 1 2 0  DA 10 2 5 2.08 3.20 111.7 -1.51 -0.66 19.8 84 8 10 7 5 1 3 0  DA 5 1 DC 6 1 DT 7 1 DA 10 2 DA 13 2 DC 14 2 6 1.21 1.83 113.4 -1.32 -0.44 14.7 81 10 6 6 4 1 3 1  DA 5 1 DC 6 1 DT 7 1 DA 10 2 DT 12 2 DA 13 2 DC 14 2 7 1.33 1.86 146.6 -1.55 -0.25 22.5 79 11 10 7 9 5 3 0   8 2.03 2.97 162.2 -1.56 -0.47 20.6 86 12 10 10 11 2 2 0  DC 6 1 DT 7 1 DA 13 2 DC 14 2 9 1.24 1.34 164.7 -2.32 -0.60 24.9 84 19 11 12 2 3 3 0  DT 17 5 TT 18 5 DC 20 5 DC 21 5 DT 25 5 DC 26 5 D A 27 5 U 1 6 G 3 6 A 4 6 C 5 6 C 6 6 A 10 6 10 2.79 3.81 170.0 -2.17 -0.56 22.7 88 22 10 19 5 1 3 0   11 1.25 1.83 175.4 -1.19 -0.41 14.8 84 14 7 8 11 3 2 1  DA 1 1 DT 7 1 DT 12 2 DA 13 2 DC 14 2 DT 15 2 DT 16 2 DT 17 2 TT 18 2 DC 20 2 C 5 3 C 6 3 A 10 3 MG 2457 A 12 1.22 1.37 182.9 -2.24 -0.60 24.5 84 19 11 11 6 1 4 0  DA 1 4 DA 2 4 DT 17 5 TT 18 5 DC 20 5 DC 21 5 DT 25 5 DC 26 5 DA 27 5 U 1 6 G 3 6 A 4 6 C 5 6 C 6 6 13 2.31 3.91 184.2 -2.14 -0.53 23.9 83 19 12 13 8 2 3 1  DA 1 4 DA 2 4 14 1.64 1.87 193.0 -1.56 -0.44 21.9 85 21 14 7 14 2 4 0  DA 1 1 DA 2 1 DA 10 2 DT 17 2 TT 18 2 DC 20 2 DC 21 2 DT 25 2 DC 26 2 DA 27 2 U 1 3 G 3 3 A 4 3 C 5 3 C 6 3 15 2.01 3.57 199.6 -1.64 -0.42 19.7 83 18 11 16 9 4 3 1  DT 17 5 TT 18 5 DC 20 5 C 5 6 C 6 6 A 10 6 16 1.20 1.87 200.8 -1.59 -0.38 19.3 77 18 7 7 4 4 4 1  DT 7 1 DT 12 2 DA 13 2 DA 27 2 DT 28 2 U 1 3 17 1.42 3.17 204.8 -1.91 -0.48 24.7 86 20 10 12 11 1 1 0  DA 1 1 DA 2 1 DA 10 2 DT 17 2 TT 18 2 DC 20 2 DC 21 2 DT 25 2 DC 26 2 DA 27 2 DT 28 2 G 3 3 A 4 3 C 5 3 C 6 3 18 1.25 1.31 226.9 -2.10 -0.64 23.0 87 23 15 15 10 0 2 0  DA 1 4 DA 2 4 DT 17 5 TT 18 5 DC 20 5 DC 21 5 DT 25 5 DC 26 5 DA 27 5 DT 28 5 U 1 6 G 3 6 A 4 6 C 5 6 C 6 6 19 1.16 1.16 228.8 -2.09 -0.51 23.4 82 21 11 17 4 4 5 0   20 1.96 2.19 240.0 -2.04 -0.56 26.6 85 26 24 13 10 0 5 0   21 1.43 1.43 245.6 -1.82 -0.46 20.2 86 27 12 19 11 1 5 0  DA 1 1 DA 2 1 DA 10 2 DT 17 2 TT 18 2 DC 20 2 DC 21 2 DT 25 2 DC 26 2 DA 27 2 U 1 3 G 3 3 A 4 3 C 5 3 C 6 3 22 1.21 1.36 266.6 -1.95 -0.48 22.8 84 21 16 16 8 6 1 0  DT 17 5 TT 18 5 DC 20 5 DC 21 5 DT 25 5 DC 26 5 D A 27 5 DT 28 5 U 1 6 G 3 6 A 4 6 C 5 6 C 6 6 A 10 6 23 1.47 1.62 267.9 -1.85 -0.49 26.2 85 32 24 16 11 1 4 0   24 1.65 1.86 262.1 -1.88 -0.40 21.0 85 20 14 16 11 4 2 0   25 1.23 1.35 284.8 -1.92 -0.49 22.9 85 21 16 16 12 4 2 0  DA 1 4 DA 2 4 DT 17 5 TT 18 5 DC 20 5 DC 21 5 DT 25 5 DC 26 5 DA 27 5 DT 28 5 U 1 6 G 3 6 A 4 6 C 5 6 C 6 6 26 1.88 2.22 310.7 -1.89 -0.47 23.5 86 31 24 24 14 6 4 0   27 1.52 1.60 315.0 -1.95 -0.46 20.2 85 28 15 26 10 5 4 0   28 2.06 3.86 372.2 -1.87 -0.38 21.6 86 33 18 30 16 5 3 0   29 1.31 2.58 382.2 -1.68 -0.46 22.4 86 36 29 19 20 6 3 1  DC 6 1 DT 7 1 DT 12 2 DA 13 2 DC 14 2 DA 27 5 DT 28 5 30 1.18 1.44 399.4 -1.81 -0.51 22.3 86 39 29 25 21 4 7 0  DA 1 1 DA 2 1 DA 10 2 DT 17 2 TT 18 2 DC 20 2 DC 21 2 DT 25 2 DC 26 2 DA 27 2 U 1 3 G 3 3 A 4 3 C 5 3 C 6 3 DA 27 5 DT 28 5 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.