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PDBsum entry 2ja3

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Pore analysis for: 2ja3 calculated with MOLE 2.0 PDB id
2ja3
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 1.52 36.2 -0.53 -0.41 7.3 86 4 1 2 7 0 0 0  
2 1.59 1.59 39.3 -0.39 -0.33 9.3 85 4 2 2 9 0 0 0  
3 2.85 4.02 47.5 -2.36 -0.51 30.3 82 10 6 1 2 1 0 0  ADP 1752 A
4 1.54 1.55 48.2 -0.34 -0.23 12.2 85 5 3 2 5 1 1 0  
5 1.61 1.70 55.3 -0.38 -0.33 9.9 87 5 4 2 6 1 1 0  
6 1.89 2.45 63.7 -1.47 -0.10 26.9 82 8 3 3 5 1 0 0  ADP 1752 A
7 1.57 1.58 69.5 -0.71 -0.24 15.0 86 8 4 3 7 2 0 0  ADP 1754 B
8 2.74 3.51 73.8 -2.59 -0.51 32.6 81 15 6 2 2 1 0 0  ADP 1752 E
9 1.88 2.46 76.7 -1.73 -0.27 30.6 80 12 8 1 7 0 0 0  
10 1.58 1.57 77.7 -0.76 -0.27 16.1 85 8 5 2 9 2 0 0  ADP 1752 A
11 2.75 3.59 79.8 -2.95 -0.51 38.2 80 16 7 1 1 1 0 0  ADP 1752 E
12 1.58 1.59 80.1 -1.12 -0.33 18.7 85 10 6 3 8 2 0 0  ADP 1752 E
13 2.78 3.96 79.9 -2.91 -0.58 35.7 79 15 6 1 0 1 0 0  ADP 1754 B
14 2.85 4.03 79.7 -2.79 -0.55 34.8 81 15 7 1 1 1 0 0  ADP 1752 A
15 1.47 1.58 88.9 -0.20 -0.25 9.6 86 7 5 3 15 2 0 0  
16 1.56 1.55 89.9 -1.55 -0.43 22.9 81 15 6 1 8 1 0 0  
17 1.45 1.53 92.3 -0.20 -0.28 8.7 87 7 4 3 14 2 0 0  
18 1.55 1.52 102.2 -0.96 -0.31 14.7 85 9 5 2 8 2 1 0  ADP 1754 B
19 1.50 1.55 105.6 -0.93 -0.37 13.3 85 9 4 2 7 2 1 0  ADP 1754 B
20 1.85 2.45 108.9 -2.28 -0.37 34.8 79 17 9 1 6 0 0 0  
21 2.68 3.41 112.0 -2.24 -0.40 27.5 82 13 7 2 2 2 1 0  ADP 1754 B ADP 1752 E
22 1.59 1.59 116.1 -1.42 -0.38 21.8 84 15 7 3 10 2 0 0  ADP 1752 E
23 1.50 1.51 116.1 -0.84 -0.23 15.3 83 11 7 2 9 2 1 0  ADP 1752 E
24 1.55 1.55 119.5 -0.80 -0.27 14.1 84 11 6 2 8 2 1 0  ADP 1752 E
25 1.95 2.55 131.1 -2.07 -0.32 30.9 81 18 8 4 7 1 0 0  ADP 1752 E
26 1.99 2.15 132.2 -2.20 -0.48 26.0 83 17 6 3 2 2 1 0  ADP 1752 A ADP 1755 C
27 1.99 2.15 132.5 -2.23 -0.50 26.7 83 15 5 2 1 2 1 0  ADP 1754 B ADP 1755 C
28 2.72 3.44 141.2 -2.35 -0.43 29.2 82 17 8 3 3 2 1 0  ADP 1752 A ADP 1752 E
29 1.54 1.55 142.5 -1.37 -0.40 19.2 84 15 5 2 9 2 1 0  ADP 1755 C
30 1.86 2.43 161.4 -1.89 -0.36 27.0 82 18 8 3 7 1 1 0  ADP 1755 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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