PDBsum entry 2j5t Go to PDB code:  Pore analysis for: 2j5t calculated with MOLE 2.0 PDB id 2j5t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   14 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.46 3.70 30.1 -1.63 -0.69 19.3 86 4 3 2 1 0 0 0  SO4 1370 C GLU 1371 C 2 3.22 3.59 43.2 -1.30 -0.61 20.5 84 5 5 2 3 0 0 1  SO4 1370 C GLU 1371 C 3 1.98 2.09 53.8 -3.07 -0.82 37.0 81 6 8 2 2 0 0 0   4 2.25 5.39 63.5 -2.57 -0.90 32.5 84 5 13 4 1 0 0 0   5 3.31 4.68 64.7 -1.60 -0.38 24.2 88 12 6 4 4 0 0 0  SO4 1370 C GLU 1371 C CL 1374 D CL 1374 G 6 2.00 2.15 66.2 -2.48 -0.90 31.5 82 4 14 2 2 0 0 0   7 1.96 5.25 77.8 -2.09 -0.82 31.2 83 4 12 0 4 0 0 0  MG 1376 G MG 1371 H 8 2.06 3.87 83.7 -2.30 -0.88 29.5 84 2 12 2 5 0 0 0  MG 1376 G MG 1371 H 9 2.34 3.85 68.1 -2.29 -0.87 29.1 84 2 13 3 3 0 0 0  MG 1378 A MG 1375 B 10 2.82 5.54 50.6 -3.09 -0.64 25.5 86 11 1 7 2 1 0 0  CL 1372 B 11 3.06 3.46 42.8 -2.71 -0.70 27.0 85 6 4 1 2 0 0 0   12 2.44 3.89 57.9 -2.44 -0.88 34.6 83 3 10 1 2 0 0 0  MG 1377 E MG 1375 F 13 1.74 3.28 84.3 -1.35 -0.24 23.1 83 6 5 3 8 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.