PDBsum entry 2j4z Go to PDB code:  Tunnel analysis for: 2j4z calculated with MOLE 2.0 PDB id 2j4z Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.57 22.6 0.14 0.38 20.8 78 3 2 1 5 1 0 1  ARS 1396 B 2 1.16 1.16 16.3 -0.09 -0.32 7.2 65 1 0 1 2 1 0 0   3 1.17 1.17 20.0 -0.60 -0.31 13.5 65 2 1 1 2 2 0 0   4 1.51 3.00 24.8 1.89 0.67 10.3 72 4 0 0 8 1 0 0  626 1389 A 5 1.51 3.00 28.8 -0.73 -0.26 15.3 83 4 0 3 5 1 0 0  626 1389 A 6 1.50 3.00 31.6 -0.67 -0.28 14.7 77 5 1 2 6 2 0 0  626 1389 A 7 1.54 3.01 32.8 -1.00 -0.41 16.1 82 4 2 3 5 1 0 0  626 1389 A 8 1.52 3.00 36.5 -0.44 -0.27 13.1 76 3 2 3 7 3 0 0  626 1389 A 9 1.20 1.54 17.5 -2.13 -0.33 26.6 74 2 1 1 1 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.