PDBsum entry 2j4a Go to PDB code:  Tunnel analysis for: 2j4a calculated with MOLE 2.0 PDB id 2j4a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.34 15.2 -2.03 -0.73 19.4 84 2 1 1 0 0 0 0   2 1.23 1.31 18.3 -1.81 -0.64 17.5 81 3 2 1 1 0 1 0   3 1.48 1.53 15.5 -0.24 -0.42 5.5 80 1 1 0 2 0 1 0   4 1.30 1.30 16.4 -0.81 0.10 16.6 83 3 1 3 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.