PDBsum entry 2j1d Go to PDB code:  Tunnel analysis for: 2j1d calculated with MOLE 2.0 PDB id 2j1d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.93 17.6 0.82 0.19 10.0 77 1 1 1 4 1 0 1   2 1.09 1.38 15.6 1.50 0.29 1.6 84 0 0 1 6 1 0 0   3 1.30 1.43 15.7 2.15 0.56 1.4 59 0 0 0 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.